Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4160 and EX28DRAFT_4161 are separated by 135 nucleotides EX28DRAFT_4161 and EX28DRAFT_4162 overlap by 4 nucleotides
EX28DRAFT_4160: EX28DRAFT_4160 - uroporphyrin-III C-methyltransferase, at 140,215 to 141,588
_4160
EX28DRAFT_4161: EX28DRAFT_4161 - nitrite reductase [NAD(P)H], small subunit, at 141,724 to 142,050
_4161
EX28DRAFT_4162: EX28DRAFT_4162 - nitrite reductase [NAD(P)H], large subunit, at 142,047 to 144,590
_4162
Position (kb) 141
142
143 Strain fitness (log2 ratio) -1
0
1 at 140.850 kb on - strand, within EX28DRAFT_4160 at 141.414 kb on + strand, within EX28DRAFT_4160 at 141.595 kb on - strand at 141.695 kb on + strand at 141.696 kb on - strand at 141.696 kb on - strand at 141.725 kb on + strand at 141.767 kb on + strand, within EX28DRAFT_4161 at 141.767 kb on + strand, within EX28DRAFT_4161 at 141.768 kb on - strand, within EX28DRAFT_4161 at 141.919 kb on - strand, within EX28DRAFT_4161 at 142.033 kb on - strand at 142.079 kb on + strand at 142.079 kb on + strand at 142.079 kb on + strand at 142.088 kb on - strand at 142.131 kb on + strand at 142.131 kb on + strand at 142.132 kb on - strand at 142.132 kb on - strand at 142.304 kb on - strand, within EX28DRAFT_4162 at 142.372 kb on + strand, within EX28DRAFT_4162 at 142.372 kb on + strand, within EX28DRAFT_4162 at 142.478 kb on - strand, within EX28DRAFT_4162 at 142.810 kb on + strand, within EX28DRAFT_4162 at 142.811 kb on - strand, within EX28DRAFT_4162 at 142.833 kb on - strand, within EX28DRAFT_4162 at 142.898 kb on - strand, within EX28DRAFT_4162 at 142.955 kb on + strand, within EX28DRAFT_4162 at 142.975 kb on + strand, within EX28DRAFT_4162 at 142.975 kb on + strand, within EX28DRAFT_4162
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 140,850 - EX28DRAFT_4160 0.46 +0.2 141,414 + EX28DRAFT_4160 0.87 -0.9 141,595 - -0.8 141,695 + -0.0 141,696 - +0.5 141,696 - +0.2 141,725 + -0.5 141,767 + EX28DRAFT_4161 0.13 +0.7 141,767 + EX28DRAFT_4161 0.13 +0.4 141,768 - EX28DRAFT_4161 0.13 -0.2 141,919 - EX28DRAFT_4161 0.60 +0.2 142,033 - -0.2 142,079 + -0.4 142,079 + +0.5 142,079 + -0.6 142,088 - -0.4 142,131 + -0.6 142,131 + +0.2 142,132 - +0.4 142,132 - +0.4 142,304 - EX28DRAFT_4162 0.10 -0.2 142,372 + EX28DRAFT_4162 0.13 -0.5 142,372 + EX28DRAFT_4162 0.13 -0.5 142,478 - EX28DRAFT_4162 0.17 -0.1 142,810 + EX28DRAFT_4162 0.30 +0.0 142,811 - EX28DRAFT_4162 0.30 +0.4 142,833 - EX28DRAFT_4162 0.31 -0.9 142,898 - EX28DRAFT_4162 0.33 -1.0 142,955 + EX28DRAFT_4162 0.36 +1.6 142,975 + EX28DRAFT_4162 0.36 -1.5 142,975 + EX28DRAFT_4162 0.36 +0.3
Or see this region's nucleotide sequence