Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4158 and EX28DRAFT_4159 are separated by 144 nucleotides EX28DRAFT_4159 and EX28DRAFT_4160 are separated by 142 nucleotides
EX28DRAFT_4158: EX28DRAFT_4158 - tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 138,753 to 139,757
_4158
EX28DRAFT_4159: EX28DRAFT_4159 - Protein of unknown function (DUF4223), at 139,902 to 140,072
_4159
EX28DRAFT_4160: EX28DRAFT_4160 - uroporphyrin-III C-methyltransferase, at 140,215 to 141,588
_4160
Position (kb)
139
140
141 Strain fitness (log2 ratio)
-1
0
1
2
3 at 139.051 kb on - strand, within EX28DRAFT_4158 at 139.051 kb on - strand, within EX28DRAFT_4158 at 139.101 kb on + strand, within EX28DRAFT_4158 at 139.777 kb on + strand at 139.777 kb on + strand at 139.778 kb on - strand at 139.778 kb on - strand at 139.778 kb on - strand at 139.903 kb on + strand at 139.969 kb on + strand, within EX28DRAFT_4159 at 139.970 kb on - strand, within EX28DRAFT_4159 at 139.975 kb on + strand, within EX28DRAFT_4159 at 139.976 kb on - strand, within EX28DRAFT_4159 at 139.976 kb on - strand, within EX28DRAFT_4159 at 139.976 kb on - strand, within EX28DRAFT_4159 at 139.986 kb on - strand, within EX28DRAFT_4159 at 140.002 kb on - strand, within EX28DRAFT_4159 at 140.088 kb on + strand at 140.106 kb on + strand at 140.148 kb on - strand at 140.209 kb on + strand at 140.210 kb on - strand at 140.210 kb on - strand at 140.303 kb on - strand at 140.303 kb on - strand at 140.447 kb on + strand, within EX28DRAFT_4160 at 140.448 kb on - strand, within EX28DRAFT_4160 at 140.448 kb on - strand, within EX28DRAFT_4160 at 140.599 kb on - strand, within EX28DRAFT_4160 at 140.850 kb on - strand, within EX28DRAFT_4160
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 139,051 - EX28DRAFT_4158 0.30 -1.3 139,051 - EX28DRAFT_4158 0.30 -1.6 139,101 + EX28DRAFT_4158 0.35 +0.6 139,777 + +0.5 139,777 + +0.4 139,778 - -0.0 139,778 - +1.2 139,778 - -0.4 139,903 + -0.5 139,969 + EX28DRAFT_4159 0.39 +0.9 139,970 - EX28DRAFT_4159 0.40 +3.2 139,975 + EX28DRAFT_4159 0.43 +0.2 139,976 - EX28DRAFT_4159 0.43 +0.2 139,976 - EX28DRAFT_4159 0.43 +0.3 139,976 - EX28DRAFT_4159 0.43 +0.6 139,986 - EX28DRAFT_4159 0.49 -0.4 140,002 - EX28DRAFT_4159 0.58 +0.5 140,088 + +0.3 140,106 + -0.0 140,148 - +0.4 140,209 + +0.6 140,210 - +0.7 140,210 - +0.7 140,303 - -1.0 140,303 - -1.5 140,447 + EX28DRAFT_4160 0.17 -0.2 140,448 - EX28DRAFT_4160 0.17 +0.2 140,448 - EX28DRAFT_4160 0.17 -0.1 140,599 - EX28DRAFT_4160 0.28 -0.4 140,850 - EX28DRAFT_4160 0.46 +0.2
Or see this region's nucleotide sequence