Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4151 and EX28DRAFT_4152 are separated by 286 nucleotides EX28DRAFT_4152 and EX28DRAFT_4153 are separated by 57 nucleotides EX28DRAFT_4153 and EX28DRAFT_4154 are separated by 92 nucleotides
EX28DRAFT_4151: EX28DRAFT_4151 - type IV pilus secretin (or competence protein) PilQ, at 131,884 to 133,044
_4151
EX28DRAFT_4152: EX28DRAFT_4152 - shikimate kinase (EC 2.7.1.71), at 133,331 to 133,852
_4152
EX28DRAFT_4153: EX28DRAFT_4153 - 3-dehydroquinate synthase (EC 4.2.3.4), at 133,910 to 134,998
_4153
EX28DRAFT_4154: EX28DRAFT_4154 - Uncharacterized protein conserved in bacteria, at 135,091 to 136,407
_4154
Position (kb)
133
134
135 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 133.005 kb on - strand at 133.015 kb on - strand at 133.015 kb on - strand at 133.018 kb on - strand at 133.111 kb on + strand at 133.112 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.145 kb on - strand at 133.151 kb on + strand at 133.151 kb on + strand at 133.152 kb on - strand at 133.152 kb on - strand at 133.152 kb on - strand at 133.159 kb on + strand at 133.181 kb on - strand at 133.237 kb on + strand at 133.238 kb on - strand at 133.244 kb on + strand at 133.244 kb on + strand at 133.315 kb on + strand at 133.318 kb on + strand at 133.349 kb on - strand at 133.488 kb on + strand, within EX28DRAFT_4152 at 133.634 kb on + strand, within EX28DRAFT_4152 at 133.828 kb on + strand at 133.862 kb on + strand at 133.864 kb on + strand at 133.864 kb on + strand at 133.865 kb on - strand at 133.865 kb on - strand at 133.866 kb on + strand at 133.866 kb on + strand at 133.866 kb on + strand at 133.867 kb on - strand at 133.891 kb on + strand at 133.927 kb on + strand at 133.943 kb on - strand at 134.479 kb on + strand, within EX28DRAFT_4153 at 134.518 kb on + strand, within EX28DRAFT_4153 at 134.519 kb on - strand, within EX28DRAFT_4153 at 134.650 kb on + strand, within EX28DRAFT_4153 at 134.852 kb on + strand, within EX28DRAFT_4153 at 135.068 kb on + strand at 135.379 kb on - strand, within EX28DRAFT_4154 at 135.671 kb on + strand, within EX28DRAFT_4154 at 135.867 kb on + strand, within EX28DRAFT_4154 at 135.867 kb on + strand, within EX28DRAFT_4154
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 133,005 - -1.4 133,015 - -0.0 133,015 - -0.8 133,018 - +0.6 133,111 + +0.3 133,112 - +0.1 133,117 - -0.2 133,117 - -0.2 133,117 - -0.2 133,117 - +2.3 133,117 - -0.6 133,117 - -1.9 133,145 - +0.6 133,151 + +2.8 133,151 + -1.4 133,152 - -2.4 133,152 - +0.3 133,152 - -4.1 133,159 + -0.7 133,181 - -1.6 133,237 + +0.4 133,238 - +2.3 133,244 + -3.2 133,244 + -0.9 133,315 + -3.3 133,318 + -2.5 133,349 - -1.1 133,488 + EX28DRAFT_4152 0.30 -3.3 133,634 + EX28DRAFT_4152 0.58 -2.7 133,828 + -1.3 133,862 + -0.7 133,864 + -0.4 133,864 + -1.0 133,865 - -2.2 133,865 - -3.8 133,866 + -1.4 133,866 + -1.6 133,866 + -0.3 133,867 - +0.3 133,891 + -0.9 133,927 + -0.3 133,943 - -0.5 134,479 + EX28DRAFT_4153 0.52 +2.3 134,518 + EX28DRAFT_4153 0.56 -2.0 134,519 - EX28DRAFT_4153 0.56 -2.5 134,650 + EX28DRAFT_4153 0.68 +0.0 134,852 + EX28DRAFT_4153 0.87 +0.2 135,068 + +0.2 135,379 - EX28DRAFT_4154 0.22 -3.6 135,671 + EX28DRAFT_4154 0.44 -0.4 135,867 + EX28DRAFT_4154 0.59 -0.0 135,867 + EX28DRAFT_4154 0.59 +0.1
Or see this region's nucleotide sequence