Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4147

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4146 and EX28DRAFT_4147 are separated by 120 nucleotidesEX28DRAFT_4147 and EX28DRAFT_4148 overlap by 4 nucleotidesEX28DRAFT_4148 and EX28DRAFT_4149 are separated by 3 nucleotidesEX28DRAFT_4149 and EX28DRAFT_4150 overlap by 11 nucleotides EX28DRAFT_4146: EX28DRAFT_4146 - penicillin-binding protein, 1A family, at 127,101 to 129,653 _4146 EX28DRAFT_4147: EX28DRAFT_4147 - hypothetical protein, at 129,774 to 130,550 _4147 EX28DRAFT_4148: EX28DRAFT_4148 - Tfp pilus assembly protein PilN, at 130,547 to 131,041 _4148 EX28DRAFT_4149: EX28DRAFT_4149 - hypothetical protein, at 131,045 to 131,500 _4149 EX28DRAFT_4150: EX28DRAFT_4150 - Protein of unknown function (DUF2531), at 131,490 to 131,894 _4150 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1at 128.828 kb on - strand, within EX28DRAFT_4146at 128.900 kb on - strand, within EX28DRAFT_4146at 128.953 kb on + strand, within EX28DRAFT_4146at 128.953 kb on + strand, within EX28DRAFT_4146at 128.954 kb on - strand, within EX28DRAFT_4146at 128.954 kb on - strand, within EX28DRAFT_4146at 128.969 kb on + strand, within EX28DRAFT_4146at 128.970 kb on - strand, within EX28DRAFT_4146at 129.107 kb on - strand, within EX28DRAFT_4146at 129.167 kb on - strand, within EX28DRAFT_4146at 129.167 kb on - strand, within EX28DRAFT_4146at 129.236 kb on + strand, within EX28DRAFT_4146at 129.237 kb on - strand, within EX28DRAFT_4146at 129.296 kb on + strand, within EX28DRAFT_4146at 129.297 kb on - strand, within EX28DRAFT_4146at 129.382 kb on + strand, within EX28DRAFT_4146at 129.418 kb on - strandat 129.418 kb on - strandat 129.442 kb on - strandat 129.502 kb on + strandat 129.503 kb on - strandat 129.571 kb on + strandat 129.571 kb on + strandat 129.571 kb on + strandat 129.572 kb on - strandat 129.578 kb on - strandat 129.578 kb on - strandat 129.579 kb on + strandat 129.637 kb on + strandat 129.637 kb on + strandat 129.638 kb on - strandat 129.642 kb on + strandat 129.643 kb on - strandat 129.690 kb on + strandat 129.708 kb on + strandat 129.708 kb on + strandat 129.709 kb on - strandat 129.709 kb on - strandat 129.709 kb on - strandat 129.733 kb on + strandat 129.733 kb on + strandat 129.733 kb on + strandat 129.733 kb on + strandat 129.733 kb on + strandat 129.734 kb on - strandat 129.734 kb on - strandat 129.734 kb on - strandat 129.735 kb on + strandat 129.736 kb on - strandat 129.806 kb on + strandat 129.978 kb on + strand, within EX28DRAFT_4147at 130.157 kb on + strand, within EX28DRAFT_4147at 130.157 kb on + strand, within EX28DRAFT_4147at 130.158 kb on - strand, within EX28DRAFT_4147at 130.506 kb on + strandat 131.027 kb on - strandat 131.059 kb on - strandat 131.459 kb on - strandat 131.533 kb on + strand, within EX28DRAFT_4150at 131.533 kb on + strand, within EX28DRAFT_4150

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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128,828 - EX28DRAFT_4146 0.68 +0.1
128,900 - EX28DRAFT_4146 0.70 +0.2
128,953 + EX28DRAFT_4146 0.73 -0.3
128,953 + EX28DRAFT_4146 0.73 -0.2
128,954 - EX28DRAFT_4146 0.73 -0.9
128,954 - EX28DRAFT_4146 0.73 +0.3
128,969 + EX28DRAFT_4146 0.73 -0.3
128,970 - EX28DRAFT_4146 0.73 +0.2
129,107 - EX28DRAFT_4146 0.79 +0.8
129,167 - EX28DRAFT_4146 0.81 -0.7
129,167 - EX28DRAFT_4146 0.81 -0.7
129,236 + EX28DRAFT_4146 0.84 -1.3
129,237 - EX28DRAFT_4146 0.84 +0.5
129,296 + EX28DRAFT_4146 0.86 +0.2
129,297 - EX28DRAFT_4146 0.86 -0.3
129,382 + EX28DRAFT_4146 0.89 -1.0
129,418 - -0.2
129,418 - -1.6
129,442 - -1.5
129,502 + +0.6
129,503 - -0.3
129,571 + -0.5
129,571 + -0.6
129,571 + -1.5
129,572 - +0.7
129,578 - +1.0
129,578 - +0.5
129,579 + -0.4
129,637 + -1.5
129,637 + -2.0
129,638 - +0.4
129,642 + -0.5
129,643 - +1.1
129,690 + +1.2
129,708 + -0.2
129,708 + -2.1
129,709 - +0.3
129,709 - -0.3
129,709 - -0.4
129,733 + +0.5
129,733 + -0.9
129,733 + -1.0
129,733 + -0.5
129,733 + -0.5
129,734 - +0.0
129,734 - +0.8
129,734 - +1.2
129,735 + +0.4
129,736 - -0.7
129,806 + -0.5
129,978 + EX28DRAFT_4147 0.26 -0.1
130,157 + EX28DRAFT_4147 0.49 -0.7
130,157 + EX28DRAFT_4147 0.49 -0.1
130,158 - EX28DRAFT_4147 0.49 -0.2
130,506 + -0.2
131,027 - +0.5
131,059 - +0.2
131,459 - +0.1
131,533 + EX28DRAFT_4150 0.11 +0.9
131,533 + EX28DRAFT_4150 0.11 -0.8

Or see this region's nucleotide sequence