Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4139 and EX28DRAFT_4140 are separated by 125 nucleotides EX28DRAFT_4140 and EX28DRAFT_4141 are separated by 391 nucleotides
EX28DRAFT_4139: EX28DRAFT_4139 - Signal transduction histidine kinase, at 118,458 to 119,804
_4139
EX28DRAFT_4140: EX28DRAFT_4140 - phosphoenolpyruvate carboxykinase (ATP), at 119,930 to 121,549
_4140
EX28DRAFT_4141: EX28DRAFT_4141 - Disulfide bond chaperones of the HSP33 family, at 121,941 to 122,819
_4141
Position (kb)
119
120
121
122 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 118.987 kb on + strand, within EX28DRAFT_4139 at 118.988 kb on - strand, within EX28DRAFT_4139 at 118.997 kb on + strand, within EX28DRAFT_4139 at 118.999 kb on + strand, within EX28DRAFT_4139 at 118.999 kb on + strand, within EX28DRAFT_4139 at 118.999 kb on + strand, within EX28DRAFT_4139 at 119.000 kb on - strand, within EX28DRAFT_4139 at 119.057 kb on + strand, within EX28DRAFT_4139 at 119.117 kb on + strand, within EX28DRAFT_4139 at 119.123 kb on + strand, within EX28DRAFT_4139 at 119.124 kb on - strand, within EX28DRAFT_4139 at 119.160 kb on - strand, within EX28DRAFT_4139 at 119.211 kb on - strand, within EX28DRAFT_4139 at 119.251 kb on - strand, within EX28DRAFT_4139 at 119.270 kb on + strand, within EX28DRAFT_4139 at 119.289 kb on - strand, within EX28DRAFT_4139 at 119.446 kb on + strand, within EX28DRAFT_4139 at 119.606 kb on + strand, within EX28DRAFT_4139 at 119.668 kb on + strand, within EX28DRAFT_4139 at 119.691 kb on - strand at 119.931 kb on + strand at 119.931 kb on + strand at 119.938 kb on + strand at 119.939 kb on - strand at 119.939 kb on - strand at 119.981 kb on - strand at 119.981 kb on - strand at 119.982 kb on + strand at 119.982 kb on + strand at 119.983 kb on - strand at 119.983 kb on - strand at 119.983 kb on - strand at 120.054 kb on + strand at 120.055 kb on - strand at 120.055 kb on - strand at 120.205 kb on + strand, within EX28DRAFT_4140 at 120.206 kb on - strand, within EX28DRAFT_4140 at 120.206 kb on - strand, within EX28DRAFT_4140 at 120.292 kb on - strand, within EX28DRAFT_4140 at 120.538 kb on - strand, within EX28DRAFT_4140 at 120.538 kb on - strand, within EX28DRAFT_4140 at 120.697 kb on - strand, within EX28DRAFT_4140 at 120.892 kb on - strand, within EX28DRAFT_4140 at 120.892 kb on - strand, within EX28DRAFT_4140 at 120.892 kb on - strand, within EX28DRAFT_4140 at 120.892 kb on - strand, within EX28DRAFT_4140 at 121.097 kb on - strand, within EX28DRAFT_4140 at 121.271 kb on - strand, within EX28DRAFT_4140 at 121.339 kb on + strand, within EX28DRAFT_4140 at 121.341 kb on + strand, within EX28DRAFT_4140 at 121.341 kb on + strand, within EX28DRAFT_4140 at 121.341 kb on + strand, within EX28DRAFT_4140 at 121.342 kb on - strand, within EX28DRAFT_4140 at 121.342 kb on - strand, within EX28DRAFT_4140 at 121.342 kb on - strand, within EX28DRAFT_4140 at 121.342 kb on - strand, within EX28DRAFT_4140 at 121.342 kb on - strand, within EX28DRAFT_4140 at 121.342 kb on - strand, within EX28DRAFT_4140 at 121.345 kb on + strand, within EX28DRAFT_4140 at 121.345 kb on + strand, within EX28DRAFT_4140 at 121.345 kb on + strand, within EX28DRAFT_4140 at 121.345 kb on + strand, within EX28DRAFT_4140 at 121.346 kb on - strand, within EX28DRAFT_4140 at 121.455 kb on + strand at 121.467 kb on + strand at 121.468 kb on - strand at 121.504 kb on + strand at 121.532 kb on + strand at 121.541 kb on - strand at 121.549 kb on + strand at 121.569 kb on + strand at 121.573 kb on + strand at 121.574 kb on - strand at 121.627 kb on - strand at 121.633 kb on - strand at 121.654 kb on - strand at 122.011 kb on + strand at 122.011 kb on + strand at 122.011 kb on + strand at 122.012 kb on - strand at 122.012 kb on - strand at 122.393 kb on - strand, within EX28DRAFT_4141
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 118,987 + EX28DRAFT_4139 0.39 -0.7 118,988 - EX28DRAFT_4139 0.39 -0.3 118,997 + EX28DRAFT_4139 0.40 -0.8 118,999 + EX28DRAFT_4139 0.40 -0.0 118,999 + EX28DRAFT_4139 0.40 +0.4 118,999 + EX28DRAFT_4139 0.40 -0.0 119,000 - EX28DRAFT_4139 0.40 -0.8 119,057 + EX28DRAFT_4139 0.44 -0.4 119,117 + EX28DRAFT_4139 0.49 -0.7 119,123 + EX28DRAFT_4139 0.49 +0.4 119,124 - EX28DRAFT_4139 0.49 +0.6 119,160 - EX28DRAFT_4139 0.52 -0.9 119,211 - EX28DRAFT_4139 0.56 -0.4 119,251 - EX28DRAFT_4139 0.59 -0.3 119,270 + EX28DRAFT_4139 0.60 -0.5 119,289 - EX28DRAFT_4139 0.62 -0.2 119,446 + EX28DRAFT_4139 0.73 -0.5 119,606 + EX28DRAFT_4139 0.85 -0.4 119,668 + EX28DRAFT_4139 0.90 -1.7 119,691 - -0.7 119,931 + -0.0 119,931 + +0.3 119,938 + -0.1 119,939 - -0.2 119,939 - +0.7 119,981 - +0.2 119,981 - +0.4 119,982 + -0.2 119,982 + +0.1 119,983 - +0.1 119,983 - -0.2 119,983 - +0.5 120,054 + -0.1 120,055 - -0.0 120,055 - +0.5 120,205 + EX28DRAFT_4140 0.17 +0.1 120,206 - EX28DRAFT_4140 0.17 +0.1 120,206 - EX28DRAFT_4140 0.17 -0.9 120,292 - EX28DRAFT_4140 0.22 -0.3 120,538 - EX28DRAFT_4140 0.38 +0.1 120,538 - EX28DRAFT_4140 0.38 +0.6 120,697 - EX28DRAFT_4140 0.47 -0.1 120,892 - EX28DRAFT_4140 0.59 +0.9 120,892 - EX28DRAFT_4140 0.59 -0.1 120,892 - EX28DRAFT_4140 0.59 -0.7 120,892 - EX28DRAFT_4140 0.59 -1.7 121,097 - EX28DRAFT_4140 0.72 +1.1 121,271 - EX28DRAFT_4140 0.83 +0.0 121,339 + EX28DRAFT_4140 0.87 -0.3 121,341 + EX28DRAFT_4140 0.87 -2.8 121,341 + EX28DRAFT_4140 0.87 -0.6 121,341 + EX28DRAFT_4140 0.87 -0.5 121,342 - EX28DRAFT_4140 0.87 -1.0 121,342 - EX28DRAFT_4140 0.87 -0.4 121,342 - EX28DRAFT_4140 0.87 -0.1 121,342 - EX28DRAFT_4140 0.87 +0.3 121,342 - EX28DRAFT_4140 0.87 -0.4 121,342 - EX28DRAFT_4140 0.87 -0.4 121,345 + EX28DRAFT_4140 0.87 -0.8 121,345 + EX28DRAFT_4140 0.87 -0.4 121,345 + EX28DRAFT_4140 0.87 -0.8 121,345 + EX28DRAFT_4140 0.87 +0.6 121,346 - EX28DRAFT_4140 0.87 +2.3 121,455 + -0.5 121,467 + -0.2 121,468 - -0.2 121,504 + +0.6 121,532 + +0.9 121,541 - -0.5 121,549 + +0.4 121,569 + +0.5 121,573 + +0.2 121,574 - +1.1 121,627 - +0.0 121,633 - -0.6 121,654 - +0.5 122,011 + +0.5 122,011 + -2.4 122,011 + +1.2 122,012 - +0.1 122,012 - -0.4 122,393 - EX28DRAFT_4141 0.51 +0.5
Or see this region's nucleotide sequence