Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4126

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4125 and EX28DRAFT_4126 are separated by 9 nucleotidesEX28DRAFT_4126 and EX28DRAFT_4127 are separated by 67 nucleotides EX28DRAFT_4125: EX28DRAFT_4125 - glycogen/starch/alpha-glucan phosphorylases, at 102,660 to 105,053 _4125 EX28DRAFT_4126: EX28DRAFT_4126 - 4-alpha-glucanotransferase, at 105,063 to 107,141 _4126 EX28DRAFT_4127: EX28DRAFT_4127 - gluconate transporter, at 107,209 to 108,525 _4127 Position (kb) 105 106 107 108Strain fitness (log2 ratio) -1 0 1 2at 104.069 kb on + strand, within EX28DRAFT_4125at 104.316 kb on + strand, within EX28DRAFT_4125at 104.397 kb on + strand, within EX28DRAFT_4125at 104.429 kb on + strand, within EX28DRAFT_4125at 104.678 kb on + strand, within EX28DRAFT_4125at 104.678 kb on + strand, within EX28DRAFT_4125at 104.679 kb on - strand, within EX28DRAFT_4125at 104.679 kb on - strand, within EX28DRAFT_4125at 104.679 kb on - strand, within EX28DRAFT_4125at 104.733 kb on + strand, within EX28DRAFT_4125at 104.805 kb on + strand, within EX28DRAFT_4125at 104.905 kb on + strandat 104.906 kb on - strandat 104.906 kb on - strandat 104.906 kb on - strandat 104.906 kb on - strandat 104.935 kb on - strandat 105.033 kb on - strandat 105.121 kb on + strandat 105.121 kb on + strandat 105.122 kb on - strandat 105.146 kb on + strandat 105.454 kb on - strand, within EX28DRAFT_4126at 105.510 kb on + strand, within EX28DRAFT_4126at 105.510 kb on + strand, within EX28DRAFT_4126at 105.511 kb on - strand, within EX28DRAFT_4126at 105.531 kb on - strand, within EX28DRAFT_4126at 105.531 kb on - strand, within EX28DRAFT_4126at 105.660 kb on + strand, within EX28DRAFT_4126at 105.697 kb on - strand, within EX28DRAFT_4126at 105.716 kb on - strand, within EX28DRAFT_4126at 105.936 kb on + strand, within EX28DRAFT_4126at 105.970 kb on - strand, within EX28DRAFT_4126at 106.068 kb on + strand, within EX28DRAFT_4126at 106.069 kb on - strand, within EX28DRAFT_4126at 106.089 kb on + strand, within EX28DRAFT_4126at 106.114 kb on - strand, within EX28DRAFT_4126at 106.152 kb on + strand, within EX28DRAFT_4126at 106.154 kb on + strand, within EX28DRAFT_4126at 106.154 kb on + strand, within EX28DRAFT_4126at 106.154 kb on + strand, within EX28DRAFT_4126at 106.154 kb on + strand, within EX28DRAFT_4126at 106.155 kb on - strand, within EX28DRAFT_4126at 106.157 kb on + strand, within EX28DRAFT_4126at 106.157 kb on + strand, within EX28DRAFT_4126at 106.158 kb on - strand, within EX28DRAFT_4126at 106.158 kb on - strand, within EX28DRAFT_4126at 106.158 kb on - strand, within EX28DRAFT_4126at 106.158 kb on - strand, within EX28DRAFT_4126at 106.467 kb on + strand, within EX28DRAFT_4126at 106.518 kb on - strand, within EX28DRAFT_4126at 106.518 kb on - strand, within EX28DRAFT_4126at 106.602 kb on + strand, within EX28DRAFT_4126at 106.602 kb on + strand, within EX28DRAFT_4126at 106.608 kb on + strand, within EX28DRAFT_4126at 106.609 kb on - strand, within EX28DRAFT_4126at 106.610 kb on + strand, within EX28DRAFT_4126at 106.611 kb on - strand, within EX28DRAFT_4126at 106.611 kb on - strand, within EX28DRAFT_4126at 106.722 kb on + strand, within EX28DRAFT_4126at 106.797 kb on + strand, within EX28DRAFT_4126at 106.877 kb on + strand, within EX28DRAFT_4126at 106.930 kb on - strand, within EX28DRAFT_4126at 107.019 kb on + strandat 107.019 kb on + strandat 107.025 kb on + strandat 107.026 kb on - strandat 107.026 kb on - strandat 107.099 kb on + strandat 107.107 kb on + strandat 107.170 kb on + strandat 107.206 kb on - strandat 107.221 kb on - strandat 107.316 kb on - strandat 107.404 kb on + strand, within EX28DRAFT_4127at 107.499 kb on + strand, within EX28DRAFT_4127at 107.499 kb on + strand, within EX28DRAFT_4127at 107.500 kb on - strand, within EX28DRAFT_4127at 107.555 kb on + strand, within EX28DRAFT_4127at 107.556 kb on - strand, within EX28DRAFT_4127at 107.556 kb on - strand, within EX28DRAFT_4127at 107.556 kb on - strand, within EX28DRAFT_4127at 107.556 kb on - strand, within EX28DRAFT_4127at 107.655 kb on + strand, within EX28DRAFT_4127at 107.901 kb on - strand, within EX28DRAFT_4127at 108.009 kb on + strand, within EX28DRAFT_4127at 108.009 kb on + strand, within EX28DRAFT_4127at 108.113 kb on + strand, within EX28DRAFT_4127at 108.113 kb on + strand, within EX28DRAFT_4127at 108.114 kb on - strand, within EX28DRAFT_4127

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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104,069 + EX28DRAFT_4125 0.59 -0.1
104,316 + EX28DRAFT_4125 0.69 +0.6
104,397 + EX28DRAFT_4125 0.73 +0.2
104,429 + EX28DRAFT_4125 0.74 +0.1
104,678 + EX28DRAFT_4125 0.84 -0.4
104,678 + EX28DRAFT_4125 0.84 -0.2
104,679 - EX28DRAFT_4125 0.84 -1.1
104,679 - EX28DRAFT_4125 0.84 +0.1
104,679 - EX28DRAFT_4125 0.84 -0.8
104,733 + EX28DRAFT_4125 0.87 -1.1
104,805 + EX28DRAFT_4125 0.90 -0.2
104,905 + -0.0
104,906 - +1.8
104,906 - +0.8
104,906 - +0.1
104,906 - -0.5
104,935 - -0.1
105,033 - -1.0
105,121 + +0.9
105,121 + -0.1
105,122 - +0.7
105,146 + +0.7
105,454 - EX28DRAFT_4126 0.19 +0.6
105,510 + EX28DRAFT_4126 0.22 -0.1
105,510 + EX28DRAFT_4126 0.22 +1.1
105,511 - EX28DRAFT_4126 0.22 -0.0
105,531 - EX28DRAFT_4126 0.23 +0.0
105,531 - EX28DRAFT_4126 0.23 -0.4
105,660 + EX28DRAFT_4126 0.29 +0.4
105,697 - EX28DRAFT_4126 0.30 +0.9
105,716 - EX28DRAFT_4126 0.31 +0.9
105,936 + EX28DRAFT_4126 0.42 +0.5
105,970 - EX28DRAFT_4126 0.44 -0.3
106,068 + EX28DRAFT_4126 0.48 +1.0
106,069 - EX28DRAFT_4126 0.48 -0.4
106,089 + EX28DRAFT_4126 0.49 +0.0
106,114 - EX28DRAFT_4126 0.51 -1.0
106,152 + EX28DRAFT_4126 0.52 +0.3
106,154 + EX28DRAFT_4126 0.52 +0.9
106,154 + EX28DRAFT_4126 0.52 +0.4
106,154 + EX28DRAFT_4126 0.52 -1.2
106,154 + EX28DRAFT_4126 0.52 +0.2
106,155 - EX28DRAFT_4126 0.53 -0.1
106,157 + EX28DRAFT_4126 0.53 +0.0
106,157 + EX28DRAFT_4126 0.53 +0.0
106,158 - EX28DRAFT_4126 0.53 -0.2
106,158 - EX28DRAFT_4126 0.53 +0.3
106,158 - EX28DRAFT_4126 0.53 -0.5
106,158 - EX28DRAFT_4126 0.53 +1.5
106,467 + EX28DRAFT_4126 0.68 +0.7
106,518 - EX28DRAFT_4126 0.70 -1.6
106,518 - EX28DRAFT_4126 0.70 -0.2
106,602 + EX28DRAFT_4126 0.74 +0.5
106,602 + EX28DRAFT_4126 0.74 +0.7
106,608 + EX28DRAFT_4126 0.74 -0.5
106,609 - EX28DRAFT_4126 0.74 +0.2
106,610 + EX28DRAFT_4126 0.74 +0.4
106,611 - EX28DRAFT_4126 0.74 +0.9
106,611 - EX28DRAFT_4126 0.74 -0.1
106,722 + EX28DRAFT_4126 0.80 -0.2
106,797 + EX28DRAFT_4126 0.83 +0.1
106,877 + EX28DRAFT_4126 0.87 +0.0
106,930 - EX28DRAFT_4126 0.90 +0.3
107,019 + +0.4
107,019 + +0.3
107,025 + -0.0
107,026 - -1.1
107,026 - +0.1
107,099 + -0.5
107,107 + -0.1
107,170 + +0.6
107,206 - +0.2
107,221 - -0.3
107,316 - -0.3
107,404 + EX28DRAFT_4127 0.15 -0.1
107,499 + EX28DRAFT_4127 0.22 -0.0
107,499 + EX28DRAFT_4127 0.22 -0.6
107,500 - EX28DRAFT_4127 0.22 +0.1
107,555 + EX28DRAFT_4127 0.26 -0.0
107,556 - EX28DRAFT_4127 0.26 -0.4
107,556 - EX28DRAFT_4127 0.26 -0.0
107,556 - EX28DRAFT_4127 0.26 +0.1
107,556 - EX28DRAFT_4127 0.26 +0.3
107,655 + EX28DRAFT_4127 0.34 -1.1
107,901 - EX28DRAFT_4127 0.53 -0.2
108,009 + EX28DRAFT_4127 0.61 -0.3
108,009 + EX28DRAFT_4127 0.61 +0.0
108,113 + EX28DRAFT_4127 0.69 -0.5
108,113 + EX28DRAFT_4127 0.69 +0.2
108,114 - EX28DRAFT_4127 0.69 +0.0

Or see this region's nucleotide sequence