Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4085

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4084 and EX28DRAFT_4085 overlap by 4 nucleotidesEX28DRAFT_4085 and EX28DRAFT_4086 overlap by 4 nucleotides EX28DRAFT_4084: EX28DRAFT_4084 - Methionyl-tRNA formyltransferase, at 58,553 to 60,535 _4084 EX28DRAFT_4085: EX28DRAFT_4085 - Predicted xylanase/chitin deacetylase, at 60,532 to 61,434 _4085 EX28DRAFT_4086: EX28DRAFT_4086 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 61,431 to 63,086 _4086 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1at 59.573 kb on + strand, within EX28DRAFT_4084at 59.573 kb on + strand, within EX28DRAFT_4084at 59.573 kb on + strand, within EX28DRAFT_4084at 59.573 kb on + strand, within EX28DRAFT_4084at 59.573 kb on + strand, within EX28DRAFT_4084at 59.574 kb on - strand, within EX28DRAFT_4084at 59.574 kb on - strand, within EX28DRAFT_4084at 59.582 kb on + strand, within EX28DRAFT_4084at 59.656 kb on + strand, within EX28DRAFT_4084at 59.859 kb on - strand, within EX28DRAFT_4084at 59.939 kb on + strand, within EX28DRAFT_4084at 59.940 kb on - strand, within EX28DRAFT_4084at 60.128 kb on - strand, within EX28DRAFT_4084at 60.128 kb on - strand, within EX28DRAFT_4084at 60.128 kb on - strand, within EX28DRAFT_4084at 60.128 kb on - strand, within EX28DRAFT_4084at 60.217 kb on + strand, within EX28DRAFT_4084at 60.374 kb on + strandat 60.375 kb on - strandat 60.375 kb on - strandat 60.377 kb on + strandat 60.377 kb on + strandat 60.377 kb on + strandat 60.378 kb on - strandat 60.678 kb on - strand, within EX28DRAFT_4085at 60.678 kb on - strand, within EX28DRAFT_4085at 60.678 kb on - strand, within EX28DRAFT_4085at 61.099 kb on - strand, within EX28DRAFT_4085at 61.178 kb on - strand, within EX28DRAFT_4085at 61.219 kb on + strand, within EX28DRAFT_4085at 61.219 kb on + strand, within EX28DRAFT_4085at 61.220 kb on - strand, within EX28DRAFT_4085at 61.220 kb on - strand, within EX28DRAFT_4085at 61.221 kb on + strand, within EX28DRAFT_4085at 61.221 kb on + strand, within EX28DRAFT_4085at 61.222 kb on - strand, within EX28DRAFT_4085at 61.222 kb on - strand, within EX28DRAFT_4085at 61.482 kb on + strandat 61.603 kb on - strand, within EX28DRAFT_4086at 61.691 kb on + strand, within EX28DRAFT_4086at 61.691 kb on + strand, within EX28DRAFT_4086at 61.692 kb on - strand, within EX28DRAFT_4086at 61.692 kb on - strand, within EX28DRAFT_4086at 61.692 kb on - strand, within EX28DRAFT_4086at 61.692 kb on - strand, within EX28DRAFT_4086at 61.693 kb on + strand, within EX28DRAFT_4086at 61.754 kb on + strand, within EX28DRAFT_4086at 61.767 kb on - strand, within EX28DRAFT_4086at 61.767 kb on - strand, within EX28DRAFT_4086at 61.781 kb on + strand, within EX28DRAFT_4086at 61.781 kb on + strand, within EX28DRAFT_4086at 61.821 kb on + strand, within EX28DRAFT_4086at 61.821 kb on + strand, within EX28DRAFT_4086at 61.822 kb on - strand, within EX28DRAFT_4086at 61.822 kb on - strand, within EX28DRAFT_4086at 61.822 kb on - strand, within EX28DRAFT_4086at 61.839 kb on - strand, within EX28DRAFT_4086at 62.136 kb on + strand, within EX28DRAFT_4086at 62.157 kb on - strand, within EX28DRAFT_4086at 62.157 kb on - strand, within EX28DRAFT_4086at 62.157 kb on - strand, within EX28DRAFT_4086at 62.189 kb on + strand, within EX28DRAFT_4086at 62.208 kb on + strand, within EX28DRAFT_4086at 62.209 kb on - strand, within EX28DRAFT_4086at 62.209 kb on - strand, within EX28DRAFT_4086at 62.212 kb on + strand, within EX28DRAFT_4086at 62.213 kb on - strand, within EX28DRAFT_4086at 62.213 kb on - strand, within EX28DRAFT_4086at 62.310 kb on + strand, within EX28DRAFT_4086at 62.310 kb on + strand, within EX28DRAFT_4086at 62.310 kb on + strand, within EX28DRAFT_4086at 62.310 kb on + strand, within EX28DRAFT_4086at 62.311 kb on - strand, within EX28DRAFT_4086at 62.376 kb on + strand, within EX28DRAFT_4086at 62.376 kb on + strand, within EX28DRAFT_4086at 62.376 kb on + strand, within EX28DRAFT_4086at 62.376 kb on + strand, within EX28DRAFT_4086at 62.377 kb on - strand, within EX28DRAFT_4086at 62.377 kb on - strand, within EX28DRAFT_4086at 62.377 kb on - strand, within EX28DRAFT_4086at 62.377 kb on - strand, within EX28DRAFT_4086at 62.377 kb on - strand, within EX28DRAFT_4086

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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59,573 + EX28DRAFT_4084 0.51 -1.2
59,573 + EX28DRAFT_4084 0.51 -0.6
59,573 + EX28DRAFT_4084 0.51 -0.8
59,573 + EX28DRAFT_4084 0.51 -2.9
59,573 + EX28DRAFT_4084 0.51 -0.5
59,574 - EX28DRAFT_4084 0.51 -0.8
59,574 - EX28DRAFT_4084 0.51 -1.6
59,582 + EX28DRAFT_4084 0.52 -0.3
59,656 + EX28DRAFT_4084 0.56 -2.3
59,859 - EX28DRAFT_4084 0.66 -1.5
59,939 + EX28DRAFT_4084 0.70 -0.6
59,940 - EX28DRAFT_4084 0.70 +0.9
60,128 - EX28DRAFT_4084 0.79 -1.0
60,128 - EX28DRAFT_4084 0.79 -1.3
60,128 - EX28DRAFT_4084 0.79 -3.1
60,128 - EX28DRAFT_4084 0.79 -0.7
60,217 + EX28DRAFT_4084 0.84 +0.0
60,374 + -0.9
60,375 - +0.1
60,375 - -0.4
60,377 + +1.2
60,377 + -0.5
60,377 + -0.3
60,378 - -0.8
60,678 - EX28DRAFT_4085 0.16 +1.0
60,678 - EX28DRAFT_4085 0.16 +0.8
60,678 - EX28DRAFT_4085 0.16 +0.7
61,099 - EX28DRAFT_4085 0.63 +0.9
61,178 - EX28DRAFT_4085 0.72 +0.9
61,219 + EX28DRAFT_4085 0.76 +0.4
61,219 + EX28DRAFT_4085 0.76 +0.7
61,220 - EX28DRAFT_4085 0.76 +0.9
61,220 - EX28DRAFT_4085 0.76 +0.7
61,221 + EX28DRAFT_4085 0.76 +1.7
61,221 + EX28DRAFT_4085 0.76 -2.3
61,222 - EX28DRAFT_4085 0.76 +0.7
61,222 - EX28DRAFT_4085 0.76 +0.3
61,482 + +0.0
61,603 - EX28DRAFT_4086 0.10 -1.5
61,691 + EX28DRAFT_4086 0.16 -0.1
61,691 + EX28DRAFT_4086 0.16 +0.7
61,692 - EX28DRAFT_4086 0.16 +0.7
61,692 - EX28DRAFT_4086 0.16 -0.7
61,692 - EX28DRAFT_4086 0.16 +0.8
61,692 - EX28DRAFT_4086 0.16 -1.0
61,693 + EX28DRAFT_4086 0.16 +0.3
61,754 + EX28DRAFT_4086 0.20 +0.5
61,767 - EX28DRAFT_4086 0.20 +1.0
61,767 - EX28DRAFT_4086 0.20 -0.1
61,781 + EX28DRAFT_4086 0.21 +0.4
61,781 + EX28DRAFT_4086 0.21 +0.5
61,821 + EX28DRAFT_4086 0.24 +0.1
61,821 + EX28DRAFT_4086 0.24 -0.0
61,822 - EX28DRAFT_4086 0.24 +0.2
61,822 - EX28DRAFT_4086 0.24 -0.2
61,822 - EX28DRAFT_4086 0.24 +0.6
61,839 - EX28DRAFT_4086 0.25 +0.4
62,136 + EX28DRAFT_4086 0.43 -0.1
62,157 - EX28DRAFT_4086 0.44 +0.9
62,157 - EX28DRAFT_4086 0.44 +1.2
62,157 - EX28DRAFT_4086 0.44 +1.0
62,189 + EX28DRAFT_4086 0.46 +0.4
62,208 + EX28DRAFT_4086 0.47 -0.2
62,209 - EX28DRAFT_4086 0.47 +0.7
62,209 - EX28DRAFT_4086 0.47 -1.8
62,212 + EX28DRAFT_4086 0.47 +0.2
62,213 - EX28DRAFT_4086 0.47 -0.8
62,213 - EX28DRAFT_4086 0.47 +0.0
62,310 + EX28DRAFT_4086 0.53 +0.3
62,310 + EX28DRAFT_4086 0.53 -0.1
62,310 + EX28DRAFT_4086 0.53 +0.2
62,310 + EX28DRAFT_4086 0.53 -0.3
62,311 - EX28DRAFT_4086 0.53 +0.3
62,376 + EX28DRAFT_4086 0.57 +1.4
62,376 + EX28DRAFT_4086 0.57 +0.1
62,376 + EX28DRAFT_4086 0.57 +1.4
62,376 + EX28DRAFT_4086 0.57 +0.9
62,377 - EX28DRAFT_4086 0.57 -0.3
62,377 - EX28DRAFT_4086 0.57 +0.4
62,377 - EX28DRAFT_4086 0.57 -1.0
62,377 - EX28DRAFT_4086 0.57 +0.3
62,377 - EX28DRAFT_4086 0.57 +0.6

Or see this region's nucleotide sequence