Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4082 and EX28DRAFT_4083 are separated by 1 nucleotides EX28DRAFT_4083 and EX28DRAFT_4084 overlap by 4 nucleotides EX28DRAFT_4084 and EX28DRAFT_4085 overlap by 4 nucleotides EX28DRAFT_4085 and EX28DRAFT_4086 overlap by 4 nucleotides
EX28DRAFT_4082: EX28DRAFT_4082 - Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis, at 56,432 to 57,571
_4082
EX28DRAFT_4083: EX28DRAFT_4083 - Glycosyltransferases involved in cell wall biogenesis, at 57,573 to 58,556
_4083
EX28DRAFT_4084: EX28DRAFT_4084 - Methionyl-tRNA formyltransferase, at 58,553 to 60,535
_4084
EX28DRAFT_4085: EX28DRAFT_4085 - Predicted xylanase/chitin deacetylase, at 60,532 to 61,434
_4085
EX28DRAFT_4086: EX28DRAFT_4086 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 61,431 to 63,086
_4086
Position (kb) 58
59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 57.573 kb on - strand at 57.573 kb on - strand at 57.573 kb on - strand at 57.621 kb on + strand at 57.693 kb on + strand, within EX28DRAFT_4083 at 57.804 kb on + strand, within EX28DRAFT_4083 at 57.804 kb on + strand, within EX28DRAFT_4083 at 57.805 kb on - strand, within EX28DRAFT_4083 at 57.805 kb on - strand, within EX28DRAFT_4083 at 58.122 kb on - strand, within EX28DRAFT_4083 at 58.207 kb on - strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.406 kb on + strand, within EX28DRAFT_4083 at 58.406 kb on + strand, within EX28DRAFT_4083 at 58.407 kb on - strand, within EX28DRAFT_4083 at 58.452 kb on + strand, within EX28DRAFT_4083 at 58.453 kb on - strand, within EX28DRAFT_4083 at 58.467 kb on + strand at 58.467 kb on + strand at 58.467 kb on + strand at 58.468 kb on - strand at 58.468 kb on - strand at 58.500 kb on - strand at 58.738 kb on - strand at 58.800 kb on - strand, within EX28DRAFT_4084 at 58.802 kb on + strand, within EX28DRAFT_4084 at 59.006 kb on - strand, within EX28DRAFT_4084 at 59.247 kb on - strand, within EX28DRAFT_4084 at 59.408 kb on + strand, within EX28DRAFT_4084 at 59.573 kb on + strand, within EX28DRAFT_4084 at 59.573 kb on + strand, within EX28DRAFT_4084 at 59.573 kb on + strand, within EX28DRAFT_4084 at 59.573 kb on + strand, within EX28DRAFT_4084 at 59.573 kb on + strand, within EX28DRAFT_4084 at 59.574 kb on - strand, within EX28DRAFT_4084 at 59.574 kb on - strand, within EX28DRAFT_4084 at 59.582 kb on + strand, within EX28DRAFT_4084 at 59.656 kb on + strand, within EX28DRAFT_4084 at 59.859 kb on - strand, within EX28DRAFT_4084 at 59.939 kb on + strand, within EX28DRAFT_4084 at 59.940 kb on - strand, within EX28DRAFT_4084 at 60.128 kb on - strand, within EX28DRAFT_4084 at 60.128 kb on - strand, within EX28DRAFT_4084 at 60.128 kb on - strand, within EX28DRAFT_4084 at 60.128 kb on - strand, within EX28DRAFT_4084 at 60.217 kb on + strand, within EX28DRAFT_4084 at 60.374 kb on + strand at 60.375 kb on - strand at 60.375 kb on - strand at 60.377 kb on + strand at 60.377 kb on + strand at 60.377 kb on + strand at 60.378 kb on - strand at 60.678 kb on - strand, within EX28DRAFT_4085 at 60.678 kb on - strand, within EX28DRAFT_4085 at 60.678 kb on - strand, within EX28DRAFT_4085 at 61.099 kb on - strand, within EX28DRAFT_4085 at 61.178 kb on - strand, within EX28DRAFT_4085 at 61.219 kb on + strand, within EX28DRAFT_4085 at 61.219 kb on + strand, within EX28DRAFT_4085 at 61.220 kb on - strand, within EX28DRAFT_4085 at 61.220 kb on - strand, within EX28DRAFT_4085 at 61.221 kb on + strand, within EX28DRAFT_4085 at 61.221 kb on + strand, within EX28DRAFT_4085 at 61.222 kb on - strand, within EX28DRAFT_4085 at 61.222 kb on - strand, within EX28DRAFT_4085 at 61.482 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 57,573 - -0.5 57,573 - -0.6 57,573 - +0.7 57,621 + -1.5 57,693 + EX28DRAFT_4083 0.12 -0.7 57,804 + EX28DRAFT_4083 0.23 -1.0 57,804 + EX28DRAFT_4083 0.23 -0.8 57,805 - EX28DRAFT_4083 0.24 -0.7 57,805 - EX28DRAFT_4083 0.24 -2.1 58,122 - EX28DRAFT_4083 0.56 -1.2 58,207 - EX28DRAFT_4083 0.64 +0.7 58,236 + EX28DRAFT_4083 0.67 -0.0 58,236 + EX28DRAFT_4083 0.67 -0.7 58,236 + EX28DRAFT_4083 0.67 +1.4 58,236 + EX28DRAFT_4083 0.67 -1.2 58,237 - EX28DRAFT_4083 0.67 +0.2 58,237 - EX28DRAFT_4083 0.67 -1.1 58,237 - EX28DRAFT_4083 0.67 -0.5 58,237 - EX28DRAFT_4083 0.67 +0.6 58,406 + EX28DRAFT_4083 0.85 +0.7 58,406 + EX28DRAFT_4083 0.85 -1.4 58,407 - EX28DRAFT_4083 0.85 -0.6 58,452 + EX28DRAFT_4083 0.89 -0.1 58,453 - EX28DRAFT_4083 0.89 +1.0 58,467 + -0.2 58,467 + -1.4 58,467 + -0.1 58,468 - -0.5 58,468 - -1.0 58,500 - -0.8 58,738 - -0.2 58,800 - EX28DRAFT_4084 0.12 -0.6 58,802 + EX28DRAFT_4084 0.13 -0.4 59,006 - EX28DRAFT_4084 0.23 -0.1 59,247 - EX28DRAFT_4084 0.35 -0.4 59,408 + EX28DRAFT_4084 0.43 +0.2 59,573 + EX28DRAFT_4084 0.51 -1.2 59,573 + EX28DRAFT_4084 0.51 -0.6 59,573 + EX28DRAFT_4084 0.51 -0.8 59,573 + EX28DRAFT_4084 0.51 -2.9 59,573 + EX28DRAFT_4084 0.51 -0.5 59,574 - EX28DRAFT_4084 0.51 -0.8 59,574 - EX28DRAFT_4084 0.51 -1.6 59,582 + EX28DRAFT_4084 0.52 -0.3 59,656 + EX28DRAFT_4084 0.56 -2.3 59,859 - EX28DRAFT_4084 0.66 -1.5 59,939 + EX28DRAFT_4084 0.70 -0.6 59,940 - EX28DRAFT_4084 0.70 +0.9 60,128 - EX28DRAFT_4084 0.79 -1.0 60,128 - EX28DRAFT_4084 0.79 -1.3 60,128 - EX28DRAFT_4084 0.79 -3.1 60,128 - EX28DRAFT_4084 0.79 -0.7 60,217 + EX28DRAFT_4084 0.84 +0.0 60,374 + -0.9 60,375 - +0.1 60,375 - -0.4 60,377 + +1.2 60,377 + -0.5 60,377 + -0.3 60,378 - -0.8 60,678 - EX28DRAFT_4085 0.16 +1.0 60,678 - EX28DRAFT_4085 0.16 +0.8 60,678 - EX28DRAFT_4085 0.16 +0.7 61,099 - EX28DRAFT_4085 0.63 +0.9 61,178 - EX28DRAFT_4085 0.72 +0.9 61,219 + EX28DRAFT_4085 0.76 +0.4 61,219 + EX28DRAFT_4085 0.76 +0.7 61,220 - EX28DRAFT_4085 0.76 +0.9 61,220 - EX28DRAFT_4085 0.76 +0.7 61,221 + EX28DRAFT_4085 0.76 +1.7 61,221 + EX28DRAFT_4085 0.76 -2.3 61,222 - EX28DRAFT_4085 0.76 +0.7 61,222 - EX28DRAFT_4085 0.76 +0.3 61,482 + +0.0
Or see this region's nucleotide sequence