Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4082 and EX28DRAFT_4083 are separated by 1 nucleotides EX28DRAFT_4083 and EX28DRAFT_4084 overlap by 4 nucleotides
EX28DRAFT_4082: EX28DRAFT_4082 - Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis, at 56,432 to 57,571
_4082
EX28DRAFT_4083: EX28DRAFT_4083 - Glycosyltransferases involved in cell wall biogenesis, at 57,573 to 58,556
_4083
EX28DRAFT_4084: EX28DRAFT_4084 - Methionyl-tRNA formyltransferase, at 58,553 to 60,535
_4084
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1 at 56.662 kb on + strand, within EX28DRAFT_4082 at 56.695 kb on + strand, within EX28DRAFT_4082 at 56.695 kb on + strand, within EX28DRAFT_4082 at 56.695 kb on + strand, within EX28DRAFT_4082 at 56.747 kb on - strand, within EX28DRAFT_4082 at 56.820 kb on - strand, within EX28DRAFT_4082 at 56.876 kb on - strand, within EX28DRAFT_4082 at 56.919 kb on - strand, within EX28DRAFT_4082 at 56.919 kb on - strand, within EX28DRAFT_4082 at 56.934 kb on + strand, within EX28DRAFT_4082 at 56.934 kb on + strand, within EX28DRAFT_4082 at 56.980 kb on + strand, within EX28DRAFT_4082 at 57.133 kb on + strand, within EX28DRAFT_4082 at 57.137 kb on + strand, within EX28DRAFT_4082 at 57.137 kb on + strand, within EX28DRAFT_4082 at 57.138 kb on - strand, within EX28DRAFT_4082 at 57.181 kb on - strand, within EX28DRAFT_4082 at 57.310 kb on + strand, within EX28DRAFT_4082 at 57.311 kb on - strand, within EX28DRAFT_4082 at 57.311 kb on - strand, within EX28DRAFT_4082 at 57.451 kb on - strand, within EX28DRAFT_4082 at 57.476 kb on - strand at 57.573 kb on - strand at 57.573 kb on - strand at 57.573 kb on - strand at 57.621 kb on + strand at 57.693 kb on + strand, within EX28DRAFT_4083 at 57.804 kb on + strand, within EX28DRAFT_4083 at 57.804 kb on + strand, within EX28DRAFT_4083 at 57.805 kb on - strand, within EX28DRAFT_4083 at 57.805 kb on - strand, within EX28DRAFT_4083 at 58.122 kb on - strand, within EX28DRAFT_4083 at 58.207 kb on - strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.236 kb on + strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.237 kb on - strand, within EX28DRAFT_4083 at 58.406 kb on + strand, within EX28DRAFT_4083 at 58.406 kb on + strand, within EX28DRAFT_4083 at 58.407 kb on - strand, within EX28DRAFT_4083 at 58.452 kb on + strand, within EX28DRAFT_4083 at 58.453 kb on - strand, within EX28DRAFT_4083 at 58.467 kb on + strand at 58.467 kb on + strand at 58.467 kb on + strand at 58.468 kb on - strand at 58.468 kb on - strand at 58.500 kb on - strand at 58.738 kb on - strand at 58.800 kb on - strand, within EX28DRAFT_4084 at 58.802 kb on + strand, within EX28DRAFT_4084 at 59.006 kb on - strand, within EX28DRAFT_4084 at 59.247 kb on - strand, within EX28DRAFT_4084 at 59.408 kb on + strand, within EX28DRAFT_4084
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 56,662 + EX28DRAFT_4082 0.20 +0.8 56,695 + EX28DRAFT_4082 0.23 +0.4 56,695 + EX28DRAFT_4082 0.23 -0.5 56,695 + EX28DRAFT_4082 0.23 -1.2 56,747 - EX28DRAFT_4082 0.28 -0.3 56,820 - EX28DRAFT_4082 0.34 -0.8 56,876 - EX28DRAFT_4082 0.39 -0.6 56,919 - EX28DRAFT_4082 0.43 +0.2 56,919 - EX28DRAFT_4082 0.43 -0.9 56,934 + EX28DRAFT_4082 0.44 +0.2 56,934 + EX28DRAFT_4082 0.44 -0.8 56,980 + EX28DRAFT_4082 0.48 -1.3 57,133 + EX28DRAFT_4082 0.61 -2.5 57,137 + EX28DRAFT_4082 0.62 +0.3 57,137 + EX28DRAFT_4082 0.62 -1.6 57,138 - EX28DRAFT_4082 0.62 +0.8 57,181 - EX28DRAFT_4082 0.66 +0.1 57,310 + EX28DRAFT_4082 0.77 +0.0 57,311 - EX28DRAFT_4082 0.77 -0.9 57,311 - EX28DRAFT_4082 0.77 -0.6 57,451 - EX28DRAFT_4082 0.89 -0.8 57,476 - -0.6 57,573 - -0.5 57,573 - -0.6 57,573 - +0.7 57,621 + -1.5 57,693 + EX28DRAFT_4083 0.12 -0.7 57,804 + EX28DRAFT_4083 0.23 -1.0 57,804 + EX28DRAFT_4083 0.23 -0.8 57,805 - EX28DRAFT_4083 0.24 -0.7 57,805 - EX28DRAFT_4083 0.24 -2.1 58,122 - EX28DRAFT_4083 0.56 -1.2 58,207 - EX28DRAFT_4083 0.64 +0.7 58,236 + EX28DRAFT_4083 0.67 -0.0 58,236 + EX28DRAFT_4083 0.67 -0.7 58,236 + EX28DRAFT_4083 0.67 +1.4 58,236 + EX28DRAFT_4083 0.67 -1.2 58,237 - EX28DRAFT_4083 0.67 +0.2 58,237 - EX28DRAFT_4083 0.67 -1.1 58,237 - EX28DRAFT_4083 0.67 -0.5 58,237 - EX28DRAFT_4083 0.67 +0.6 58,406 + EX28DRAFT_4083 0.85 +0.7 58,406 + EX28DRAFT_4083 0.85 -1.4 58,407 - EX28DRAFT_4083 0.85 -0.6 58,452 + EX28DRAFT_4083 0.89 -0.1 58,453 - EX28DRAFT_4083 0.89 +1.0 58,467 + -0.2 58,467 + -1.4 58,467 + -0.1 58,468 - -0.5 58,468 - -1.0 58,500 - -0.8 58,738 - -0.2 58,800 - EX28DRAFT_4084 0.12 -0.6 58,802 + EX28DRAFT_4084 0.13 -0.4 59,006 - EX28DRAFT_4084 0.23 -0.1 59,247 - EX28DRAFT_4084 0.35 -0.4 59,408 + EX28DRAFT_4084 0.43 +0.2
Or see this region's nucleotide sequence