Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4075

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4074 and EX28DRAFT_4075 are separated by 317 nucleotidesEX28DRAFT_4075 and EX28DRAFT_4076 are separated by 167 nucleotides EX28DRAFT_4074: EX28DRAFT_4074 - Sugar phosphate permease, at 48,926 to 50,260 _4074 EX28DRAFT_4075: EX28DRAFT_4075 - Ion channel, at 50,578 to 50,976 _4075 EX28DRAFT_4076: EX28DRAFT_4076 - integral membrane protein, TerC family, at 51,144 to 52,169 _4076 Position (kb) 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1at 49.646 kb on - strand, within EX28DRAFT_4074at 49.660 kb on + strand, within EX28DRAFT_4074at 49.660 kb on + strand, within EX28DRAFT_4074at 49.665 kb on - strand, within EX28DRAFT_4074at 49.742 kb on + strand, within EX28DRAFT_4074at 49.743 kb on - strand, within EX28DRAFT_4074at 49.849 kb on - strand, within EX28DRAFT_4074at 49.908 kb on + strand, within EX28DRAFT_4074at 49.908 kb on + strand, within EX28DRAFT_4074at 49.909 kb on - strand, within EX28DRAFT_4074at 49.909 kb on - strand, within EX28DRAFT_4074at 49.939 kb on + strand, within EX28DRAFT_4074at 49.940 kb on - strand, within EX28DRAFT_4074at 49.969 kb on + strand, within EX28DRAFT_4074at 50.041 kb on - strand, within EX28DRAFT_4074at 50.052 kb on + strand, within EX28DRAFT_4074at 50.157 kb on + strandat 50.157 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.216 kb on + strandat 50.217 kb on - strandat 50.217 kb on - strandat 50.242 kb on + strandat 50.246 kb on + strandat 50.246 kb on + strandat 50.246 kb on + strandat 50.246 kb on + strandat 50.377 kb on + strandat 50.377 kb on + strandat 50.378 kb on - strandat 50.378 kb on - strandat 50.381 kb on + strandat 50.382 kb on - strandat 50.414 kb on - strandat 50.414 kb on - strandat 50.415 kb on + strandat 50.415 kb on + strandat 50.416 kb on - strandat 50.446 kb on + strandat 50.446 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.514 kb on + strandat 50.515 kb on - strandat 50.553 kb on + strandat 50.586 kb on - strandat 50.586 kb on - strandat 50.586 kb on - strandat 50.596 kb on - strandat 50.599 kb on - strandat 50.696 kb on + strand, within EX28DRAFT_4075at 50.768 kb on - strand, within EX28DRAFT_4075at 50.787 kb on + strand, within EX28DRAFT_4075at 50.828 kb on - strand, within EX28DRAFT_4075at 50.901 kb on - strand, within EX28DRAFT_4075at 51.005 kb on - strandat 51.009 kb on + strandat 51.010 kb on - strandat 51.010 kb on - strandat 51.014 kb on + strandat 51.014 kb on + strandat 51.015 kb on - strandat 51.143 kb on + strandat 51.143 kb on + strandat 51.143 kb on + strandat 51.143 kb on + strandat 51.144 kb on - strandat 51.144 kb on - strandat 51.231 kb on - strandat 51.324 kb on + strand, within EX28DRAFT_4076at 51.325 kb on - strand, within EX28DRAFT_4076at 51.795 kb on + strand, within EX28DRAFT_4076at 51.907 kb on - strand, within EX28DRAFT_4076at 51.907 kb on - strand, within EX28DRAFT_4076at 51.948 kb on + strand, within EX28DRAFT_4076at 51.948 kb on + strand, within EX28DRAFT_4076at 51.948 kb on + strand, within EX28DRAFT_4076

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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49,646 - EX28DRAFT_4074 0.54 +0.4
49,660 + EX28DRAFT_4074 0.55 -0.2
49,660 + EX28DRAFT_4074 0.55 +0.5
49,665 - EX28DRAFT_4074 0.55 +0.7
49,742 + EX28DRAFT_4074 0.61 +0.8
49,743 - EX28DRAFT_4074 0.61 -0.2
49,849 - EX28DRAFT_4074 0.69 +0.1
49,908 + EX28DRAFT_4074 0.74 -0.1
49,908 + EX28DRAFT_4074 0.74 +0.3
49,909 - EX28DRAFT_4074 0.74 +0.1
49,909 - EX28DRAFT_4074 0.74 +0.1
49,939 + EX28DRAFT_4074 0.76 +0.2
49,940 - EX28DRAFT_4074 0.76 -0.6
49,969 + EX28DRAFT_4074 0.78 +0.3
50,041 - EX28DRAFT_4074 0.84 -0.0
50,052 + EX28DRAFT_4074 0.84 +1.2
50,157 + -0.7
50,157 + +0.4
50,216 + +0.6
50,216 + -0.4
50,216 + +0.2
50,216 + -0.1
50,216 + -0.6
50,217 - +0.7
50,217 - -2.8
50,242 + +0.3
50,246 + -0.4
50,246 + -0.4
50,246 + +0.4
50,246 + -0.3
50,377 + +1.0
50,377 + -0.6
50,378 - -0.1
50,378 - -0.9
50,381 + -1.1
50,382 - -0.6
50,414 - -1.1
50,414 - -1.8
50,415 + -1.3
50,415 + +0.1
50,416 - -1.5
50,446 + -1.2
50,446 + +0.0
50,514 + +0.0
50,514 + -0.0
50,514 + +0.0
50,514 + +0.9
50,514 + -1.1
50,515 - -0.1
50,553 + -1.0
50,586 - -0.0
50,586 - +0.7
50,586 - -0.2
50,596 - +0.9
50,599 - -0.2
50,696 + EX28DRAFT_4075 0.30 +0.2
50,768 - EX28DRAFT_4075 0.48 -0.4
50,787 + EX28DRAFT_4075 0.52 -0.3
50,828 - EX28DRAFT_4075 0.63 +0.7
50,901 - EX28DRAFT_4075 0.81 -0.5
51,005 - +0.1
51,009 + +0.3
51,010 - +0.4
51,010 - -0.8
51,014 + -0.4
51,014 + -0.3
51,015 - -0.3
51,143 + +0.4
51,143 + -0.2
51,143 + -1.2
51,143 + +1.2
51,144 - -0.2
51,144 - +0.4
51,231 - +0.1
51,324 + EX28DRAFT_4076 0.18 +0.7
51,325 - EX28DRAFT_4076 0.18 +0.0
51,795 + EX28DRAFT_4076 0.63 +0.7
51,907 - EX28DRAFT_4076 0.74 +0.8
51,907 - EX28DRAFT_4076 0.74 +0.3
51,948 + EX28DRAFT_4076 0.78 +0.7
51,948 + EX28DRAFT_4076 0.78 +0.4
51,948 + EX28DRAFT_4076 0.78 -0.7

Or see this region's nucleotide sequence