Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4062 and EX28DRAFT_4063 are separated by 214 nucleotides EX28DRAFT_4063 and EX28DRAFT_4064 overlap by 35 nucleotides EX28DRAFT_4064 and EX28DRAFT_4065 are separated by 96 nucleotides
EX28DRAFT_4062: EX28DRAFT_4062 - Protein involved in catabolism of external DNA, at 37,388 to 38,230
_4062
EX28DRAFT_4063: EX28DRAFT_4063 - Zn-dependent oligopeptidases, at 38,445 to 40,487
_4063
EX28DRAFT_4064: EX28DRAFT_4064 - Putative SAM-dependent methyltransferase, at 40,453 to 41,247
_4064
EX28DRAFT_4065: EX28DRAFT_4065 - Universal stress protein UspA and related nucleotide-binding proteins, at 41,344 to 41,781
_4065
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 37.612 kb on + strand, within EX28DRAFT_4062 at 37.657 kb on - strand, within EX28DRAFT_4062 at 37.657 kb on - strand, within EX28DRAFT_4062 at 37.681 kb on - strand, within EX28DRAFT_4062 at 37.989 kb on + strand, within EX28DRAFT_4062 at 37.989 kb on + strand, within EX28DRAFT_4062 at 37.990 kb on - strand, within EX28DRAFT_4062 at 37.990 kb on - strand, within EX28DRAFT_4062 at 38.049 kb on + strand, within EX28DRAFT_4062 at 38.253 kb on - strand at 38.258 kb on + strand at 38.293 kb on - strand at 38.311 kb on - strand at 38.311 kb on - strand at 38.311 kb on - strand at 38.312 kb on + strand at 38.313 kb on - strand at 38.365 kb on + strand at 38.366 kb on - strand at 38.371 kb on + strand at 38.391 kb on + strand at 38.392 kb on - strand at 38.392 kb on - strand at 38.424 kb on + strand at 38.424 kb on + strand at 38.800 kb on - strand, within EX28DRAFT_4063 at 38.940 kb on + strand, within EX28DRAFT_4063 at 39.099 kb on + strand, within EX28DRAFT_4063 at 39.100 kb on - strand, within EX28DRAFT_4063 at 39.151 kb on - strand, within EX28DRAFT_4063 at 39.159 kb on + strand, within EX28DRAFT_4063 at 39.160 kb on - strand, within EX28DRAFT_4063 at 39.454 kb on - strand, within EX28DRAFT_4063 at 39.511 kb on - strand, within EX28DRAFT_4063 at 39.564 kb on + strand, within EX28DRAFT_4063 at 39.564 kb on + strand, within EX28DRAFT_4063 at 39.565 kb on - strand, within EX28DRAFT_4063 at 39.678 kb on + strand, within EX28DRAFT_4063 at 39.738 kb on - strand, within EX28DRAFT_4063 at 39.783 kb on - strand, within EX28DRAFT_4063 at 39.840 kb on - strand, within EX28DRAFT_4063 at 39.875 kb on + strand, within EX28DRAFT_4063 at 39.876 kb on - strand, within EX28DRAFT_4063 at 39.876 kb on - strand, within EX28DRAFT_4063 at 39.876 kb on - strand, within EX28DRAFT_4063 at 40.008 kb on + strand, within EX28DRAFT_4063 at 40.185 kb on - strand, within EX28DRAFT_4063 at 40.279 kb on - strand, within EX28DRAFT_4063 at 40.285 kb on - strand at 40.493 kb on - strand at 40.508 kb on + strand at 40.508 kb on + strand at 40.508 kb on + strand at 40.509 kb on - strand at 40.512 kb on - strand at 40.756 kb on + strand, within EX28DRAFT_4064 at 41.000 kb on - strand, within EX28DRAFT_4064 at 41.000 kb on - strand, within EX28DRAFT_4064 at 41.011 kb on - strand, within EX28DRAFT_4064 at 41.011 kb on - strand, within EX28DRAFT_4064 at 41.022 kb on + strand, within EX28DRAFT_4064 at 41.158 kb on + strand, within EX28DRAFT_4064 at 41.294 kb on + strand at 41.294 kb on + strand at 41.295 kb on - strand at 41.337 kb on - strand at 41.345 kb on + strand at 41.345 kb on + strand at 41.345 kb on + strand at 41.346 kb on - strand at 41.478 kb on - strand, within EX28DRAFT_4065
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 37,612 + EX28DRAFT_4062 0.27 +0.2 37,657 - EX28DRAFT_4062 0.32 +0.1 37,657 - EX28DRAFT_4062 0.32 -1.1 37,681 - EX28DRAFT_4062 0.35 -0.4 37,989 + EX28DRAFT_4062 0.71 +1.3 37,989 + EX28DRAFT_4062 0.71 -0.2 37,990 - EX28DRAFT_4062 0.71 -0.0 37,990 - EX28DRAFT_4062 0.71 +0.2 38,049 + EX28DRAFT_4062 0.78 -0.0 38,253 - -0.4 38,258 + +1.5 38,293 - -1.0 38,311 - -0.5 38,311 - -1.3 38,311 - -0.1 38,312 + -0.2 38,313 - -0.4 38,365 + -0.2 38,366 - -0.8 38,371 + +1.0 38,391 + -0.2 38,392 - -0.4 38,392 - -1.0 38,424 + -2.6 38,424 + -0.4 38,800 - EX28DRAFT_4063 0.17 -1.8 38,940 + EX28DRAFT_4063 0.24 -0.1 39,099 + EX28DRAFT_4063 0.32 -0.9 39,100 - EX28DRAFT_4063 0.32 -1.8 39,151 - EX28DRAFT_4063 0.35 -1.0 39,159 + EX28DRAFT_4063 0.35 -0.7 39,160 - EX28DRAFT_4063 0.35 -1.6 39,454 - EX28DRAFT_4063 0.49 -2.6 39,511 - EX28DRAFT_4063 0.52 -1.2 39,564 + EX28DRAFT_4063 0.55 -1.1 39,564 + EX28DRAFT_4063 0.55 -1.0 39,565 - EX28DRAFT_4063 0.55 +0.3 39,678 + EX28DRAFT_4063 0.60 -0.8 39,738 - EX28DRAFT_4063 0.63 -0.2 39,783 - EX28DRAFT_4063 0.65 +0.2 39,840 - EX28DRAFT_4063 0.68 -1.0 39,875 + EX28DRAFT_4063 0.70 -0.4 39,876 - EX28DRAFT_4063 0.70 -0.1 39,876 - EX28DRAFT_4063 0.70 +0.6 39,876 - EX28DRAFT_4063 0.70 -2.7 40,008 + EX28DRAFT_4063 0.77 -1.3 40,185 - EX28DRAFT_4063 0.85 -3.6 40,279 - EX28DRAFT_4063 0.90 -1.1 40,285 - -2.7 40,493 - -3.0 40,508 + -1.0 40,508 + +0.7 40,508 + -2.0 40,509 - -0.3 40,512 - -0.0 40,756 + EX28DRAFT_4064 0.38 -0.4 41,000 - EX28DRAFT_4064 0.69 +3.2 41,000 - EX28DRAFT_4064 0.69 -0.9 41,011 - EX28DRAFT_4064 0.70 -1.2 41,011 - EX28DRAFT_4064 0.70 -2.8 41,022 + EX28DRAFT_4064 0.72 +0.2 41,158 + EX28DRAFT_4064 0.89 -1.3 41,294 + -1.0 41,294 + +0.4 41,295 - -0.9 41,337 - -0.2 41,345 + +0.3 41,345 + -0.4 41,345 + -2.7 41,346 - +0.0 41,478 - EX28DRAFT_4065 0.31 +0.3
Or see this region's nucleotide sequence