Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4047 and EX28DRAFT_4048 are separated by 119 nucleotides EX28DRAFT_4048 and EX28DRAFT_4049 are separated by 159 nucleotides
EX28DRAFT_4047: EX28DRAFT_4047 - Tetratricopeptide repeat/Cellulose synthase operon protein C C-terminus (BCSC_C)/TPR repeat, at 14,150 to 17,632
_4047
EX28DRAFT_4048: EX28DRAFT_4048 - FOG: EAL domain, at 17,752 to 19,758
_4048
EX28DRAFT_4049: EX28DRAFT_4049 - Na+/H+-dicarboxylate symporters, at 19,918 to 21,204
_4049
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 16.784 kb on - strand, within EX28DRAFT_4047 at 16.856 kb on + strand, within EX28DRAFT_4047 at 16.856 kb on + strand, within EX28DRAFT_4047 at 16.885 kb on + strand, within EX28DRAFT_4047 at 16.886 kb on - strand, within EX28DRAFT_4047 at 16.948 kb on + strand, within EX28DRAFT_4047 at 16.949 kb on - strand, within EX28DRAFT_4047 at 16.978 kb on - strand, within EX28DRAFT_4047 at 16.999 kb on - strand, within EX28DRAFT_4047 at 17.009 kb on + strand, within EX28DRAFT_4047 at 17.009 kb on + strand, within EX28DRAFT_4047 at 17.010 kb on - strand, within EX28DRAFT_4047 at 17.084 kb on - strand, within EX28DRAFT_4047 at 17.111 kb on + strand, within EX28DRAFT_4047 at 17.114 kb on + strand, within EX28DRAFT_4047 at 17.114 kb on + strand, within EX28DRAFT_4047 at 17.115 kb on - strand, within EX28DRAFT_4047 at 17.117 kb on + strand, within EX28DRAFT_4047 at 17.167 kb on + strand, within EX28DRAFT_4047 at 17.168 kb on - strand, within EX28DRAFT_4047 at 17.203 kb on + strand, within EX28DRAFT_4047 at 17.204 kb on - strand, within EX28DRAFT_4047 at 17.204 kb on - strand, within EX28DRAFT_4047 at 17.226 kb on - strand, within EX28DRAFT_4047 at 17.240 kb on + strand, within EX28DRAFT_4047 at 17.240 kb on + strand, within EX28DRAFT_4047 at 17.240 kb on + strand, within EX28DRAFT_4047 at 17.240 kb on + strand, within EX28DRAFT_4047 at 17.240 kb on + strand, within EX28DRAFT_4047 at 17.241 kb on - strand, within EX28DRAFT_4047 at 17.241 kb on - strand, within EX28DRAFT_4047 at 17.329 kb on + strand at 17.330 kb on - strand at 17.394 kb on - strand at 17.445 kb on - strand at 17.494 kb on - strand at 17.494 kb on - strand at 17.494 kb on - strand at 17.529 kb on - strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.552 kb on + strand at 17.553 kb on - strand at 17.656 kb on + strand at 17.656 kb on + strand at 17.657 kb on - strand at 17.689 kb on - strand at 17.708 kb on - strand at 17.807 kb on + strand at 17.819 kb on + strand at 17.819 kb on + strand at 17.888 kb on + strand at 17.889 kb on - strand at 17.895 kb on + strand at 17.895 kb on + strand at 18.163 kb on + strand, within EX28DRAFT_4048 at 18.173 kb on + strand, within EX28DRAFT_4048 at 18.198 kb on + strand, within EX28DRAFT_4048 at 18.243 kb on - strand, within EX28DRAFT_4048 at 18.247 kb on - strand, within EX28DRAFT_4048 at 18.256 kb on - strand, within EX28DRAFT_4048 at 18.333 kb on + strand, within EX28DRAFT_4048 at 18.374 kb on + strand, within EX28DRAFT_4048 at 18.401 kb on + strand, within EX28DRAFT_4048 at 18.401 kb on + strand, within EX28DRAFT_4048 at 18.401 kb on + strand, within EX28DRAFT_4048 at 18.402 kb on - strand, within EX28DRAFT_4048 at 18.405 kb on + strand, within EX28DRAFT_4048 at 18.406 kb on - strand, within EX28DRAFT_4048 at 18.406 kb on - strand, within EX28DRAFT_4048 at 18.421 kb on + strand, within EX28DRAFT_4048 at 18.464 kb on + strand, within EX28DRAFT_4048 at 18.464 kb on + strand, within EX28DRAFT_4048 at 18.507 kb on + strand, within EX28DRAFT_4048 at 18.508 kb on - strand, within EX28DRAFT_4048 at 18.850 kb on + strand, within EX28DRAFT_4048 at 18.850 kb on + strand, within EX28DRAFT_4048 at 18.851 kb on - strand, within EX28DRAFT_4048 at 18.851 kb on - strand, within EX28DRAFT_4048 at 18.851 kb on - strand, within EX28DRAFT_4048 at 18.880 kb on + strand, within EX28DRAFT_4048 at 19.125 kb on - strand, within EX28DRAFT_4048 at 19.275 kb on + strand, within EX28DRAFT_4048 at 19.339 kb on - strand, within EX28DRAFT_4048 at 19.339 kb on - strand, within EX28DRAFT_4048 at 19.344 kb on - strand, within EX28DRAFT_4048 at 19.605 kb on + strand at 19.606 kb on - strand at 19.841 kb on + strand at 19.842 kb on - strand at 19.883 kb on - strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.945 kb on + strand at 19.945 kb on + strand at 19.994 kb on - strand at 19.996 kb on + strand at 20.237 kb on + strand, within EX28DRAFT_4049 at 20.238 kb on - strand, within EX28DRAFT_4049 at 20.436 kb on + strand, within EX28DRAFT_4049 at 20.437 kb on - strand, within EX28DRAFT_4049 at 20.442 kb on + strand, within EX28DRAFT_4049 at 20.443 kb on - strand, within EX28DRAFT_4049 at 20.488 kb on - strand, within EX28DRAFT_4049 at 20.535 kb on + strand, within EX28DRAFT_4049 at 20.544 kb on + strand, within EX28DRAFT_4049 at 20.544 kb on + strand, within EX28DRAFT_4049 at 20.544 kb on + strand, within EX28DRAFT_4049 at 20.545 kb on - strand, within EX28DRAFT_4049 at 20.545 kb on - strand, within EX28DRAFT_4049 at 20.548 kb on + strand, within EX28DRAFT_4049 at 20.548 kb on + strand, within EX28DRAFT_4049 at 20.587 kb on - strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.597 kb on - strand, within EX28DRAFT_4049 at 20.598 kb on + strand, within EX28DRAFT_4049 at 20.599 kb on - strand, within EX28DRAFT_4049 at 20.680 kb on + strand, within EX28DRAFT_4049 at 20.743 kb on - strand, within EX28DRAFT_4049
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 16,784 - EX28DRAFT_4047 0.76 -0.4 16,856 + EX28DRAFT_4047 0.78 +0.3 16,856 + EX28DRAFT_4047 0.78 -1.0 16,885 + EX28DRAFT_4047 0.79 -0.4 16,886 - EX28DRAFT_4047 0.79 -0.8 16,948 + EX28DRAFT_4047 0.80 -1.4 16,949 - EX28DRAFT_4047 0.80 -0.2 16,978 - EX28DRAFT_4047 0.81 +0.4 16,999 - EX28DRAFT_4047 0.82 +0.1 17,009 + EX28DRAFT_4047 0.82 -0.3 17,009 + EX28DRAFT_4047 0.82 -0.0 17,010 - EX28DRAFT_4047 0.82 -0.6 17,084 - EX28DRAFT_4047 0.84 +0.1 17,111 + EX28DRAFT_4047 0.85 +2.3 17,114 + EX28DRAFT_4047 0.85 +0.7 17,114 + EX28DRAFT_4047 0.85 -2.2 17,115 - EX28DRAFT_4047 0.85 -0.3 17,117 + EX28DRAFT_4047 0.85 -0.2 17,167 + EX28DRAFT_4047 0.87 -1.0 17,168 - EX28DRAFT_4047 0.87 +0.4 17,203 + EX28DRAFT_4047 0.88 +0.6 17,204 - EX28DRAFT_4047 0.88 +0.3 17,204 - EX28DRAFT_4047 0.88 +0.5 17,226 - EX28DRAFT_4047 0.88 +0.3 17,240 + EX28DRAFT_4047 0.89 -0.1 17,240 + EX28DRAFT_4047 0.89 -0.7 17,240 + EX28DRAFT_4047 0.89 +0.9 17,240 + EX28DRAFT_4047 0.89 -1.5 17,240 + EX28DRAFT_4047 0.89 -0.8 17,241 - EX28DRAFT_4047 0.89 -1.9 17,241 - EX28DRAFT_4047 0.89 +0.3 17,329 + -0.8 17,330 - -0.4 17,394 - -0.7 17,445 - -0.2 17,494 - +0.4 17,494 - -0.3 17,494 - +0.4 17,529 - -0.2 17,552 + -0.9 17,552 + -0.7 17,552 + -0.2 17,552 + -0.7 17,552 + +0.2 17,552 + -0.8 17,552 + -1.2 17,552 + -0.3 17,553 - -0.4 17,656 + -0.1 17,656 + -0.3 17,657 - +0.1 17,689 - +0.5 17,708 - +0.2 17,807 + +1.3 17,819 + +0.8 17,819 + +0.3 17,888 + -0.8 17,889 - -0.1 17,895 + +0.4 17,895 + +0.5 18,163 + EX28DRAFT_4048 0.20 -0.5 18,173 + EX28DRAFT_4048 0.21 +0.3 18,198 + EX28DRAFT_4048 0.22 +0.6 18,243 - EX28DRAFT_4048 0.24 -1.6 18,247 - EX28DRAFT_4048 0.25 -0.4 18,256 - EX28DRAFT_4048 0.25 -0.9 18,333 + EX28DRAFT_4048 0.29 -0.4 18,374 + EX28DRAFT_4048 0.31 +0.6 18,401 + EX28DRAFT_4048 0.32 +0.2 18,401 + EX28DRAFT_4048 0.32 +1.1 18,401 + EX28DRAFT_4048 0.32 +0.5 18,402 - EX28DRAFT_4048 0.32 +0.5 18,405 + EX28DRAFT_4048 0.33 -0.5 18,406 - EX28DRAFT_4048 0.33 +1.2 18,406 - EX28DRAFT_4048 0.33 +0.9 18,421 + EX28DRAFT_4048 0.33 +0.2 18,464 + EX28DRAFT_4048 0.35 -0.3 18,464 + EX28DRAFT_4048 0.35 -0.6 18,507 + EX28DRAFT_4048 0.38 -0.7 18,508 - EX28DRAFT_4048 0.38 +0.6 18,850 + EX28DRAFT_4048 0.55 +0.6 18,850 + EX28DRAFT_4048 0.55 +0.1 18,851 - EX28DRAFT_4048 0.55 +0.5 18,851 - EX28DRAFT_4048 0.55 +0.3 18,851 - EX28DRAFT_4048 0.55 +3.9 18,880 + EX28DRAFT_4048 0.56 +0.9 19,125 - EX28DRAFT_4048 0.68 -1.0 19,275 + EX28DRAFT_4048 0.76 +0.7 19,339 - EX28DRAFT_4048 0.79 +0.3 19,339 - EX28DRAFT_4048 0.79 +0.4 19,344 - EX28DRAFT_4048 0.79 +0.8 19,605 + +1.3 19,606 - +1.9 19,841 + +0.1 19,842 - +0.6 19,883 - -1.0 19,917 + -0.6 19,917 + +0.6 19,945 + -0.8 19,945 + -1.5 19,994 - -0.3 19,996 + -0.1 20,237 + EX28DRAFT_4049 0.25 -0.3 20,238 - EX28DRAFT_4049 0.25 -0.3 20,436 + EX28DRAFT_4049 0.40 +0.2 20,437 - EX28DRAFT_4049 0.40 -0.2 20,442 + EX28DRAFT_4049 0.41 -0.2 20,443 - EX28DRAFT_4049 0.41 -0.4 20,488 - EX28DRAFT_4049 0.44 +0.3 20,535 + EX28DRAFT_4049 0.48 -3.3 20,544 + EX28DRAFT_4049 0.49 +0.3 20,544 + EX28DRAFT_4049 0.49 +0.2 20,544 + EX28DRAFT_4049 0.49 -0.1 20,545 - EX28DRAFT_4049 0.49 -1.2 20,545 - EX28DRAFT_4049 0.49 -0.7 20,548 + EX28DRAFT_4049 0.49 -0.0 20,548 + EX28DRAFT_4049 0.49 -1.6 20,587 - EX28DRAFT_4049 0.52 -0.3 20,596 + EX28DRAFT_4049 0.53 -0.4 20,596 + EX28DRAFT_4049 0.53 -1.9 20,596 + EX28DRAFT_4049 0.53 -0.0 20,596 + EX28DRAFT_4049 0.53 -0.3 20,596 + EX28DRAFT_4049 0.53 -2.2 20,596 + EX28DRAFT_4049 0.53 +0.3 20,597 - EX28DRAFT_4049 0.53 -0.4 20,598 + EX28DRAFT_4049 0.53 +0.2 20,599 - EX28DRAFT_4049 0.53 -0.5 20,680 + EX28DRAFT_4049 0.59 -1.7 20,743 - EX28DRAFT_4049 0.64 +0.2
Or see this region's nucleotide sequence