Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4045 and EX28DRAFT_4046 are separated by 6 nucleotides EX28DRAFT_4046 and EX28DRAFT_4047 overlap by 19 nucleotides
EX28DRAFT_4045: EX28DRAFT_4045 - Bacterial cellulose synthase subunit, at 10,671 to 13,055
_4045
EX28DRAFT_4046: EX28DRAFT_4046 - Endoglucanase Y, at 13,062 to 14,168
_4046
EX28DRAFT_4047: EX28DRAFT_4047 - Tetratricopeptide repeat/Cellulose synthase operon protein C C-terminus (BCSC_C)/TPR repeat, at 14,150 to 17,632
_4047
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 12.066 kb on - strand, within EX28DRAFT_4045 at 12.154 kb on + strand, within EX28DRAFT_4045 at 12.180 kb on + strand, within EX28DRAFT_4045 at 12.180 kb on + strand, within EX28DRAFT_4045 at 12.180 kb on + strand, within EX28DRAFT_4045 at 12.285 kb on + strand, within EX28DRAFT_4045 at 12.285 kb on + strand, within EX28DRAFT_4045 at 12.288 kb on + strand, within EX28DRAFT_4045 at 12.288 kb on + strand, within EX28DRAFT_4045 at 12.289 kb on - strand, within EX28DRAFT_4045 at 12.289 kb on - strand, within EX28DRAFT_4045 at 12.639 kb on - strand, within EX28DRAFT_4045 at 12.729 kb on + strand, within EX28DRAFT_4045 at 12.729 kb on + strand, within EX28DRAFT_4045 at 12.729 kb on + strand, within EX28DRAFT_4045 at 12.891 kb on + strand at 12.892 kb on - strand at 12.892 kb on - strand at 12.892 kb on - strand at 12.895 kb on - strand at 12.895 kb on - strand at 12.895 kb on - strand at 12.899 kb on - strand at 12.899 kb on - strand at 12.899 kb on - strand at 12.899 kb on - strand at 13.020 kb on - strand at 13.155 kb on - strand at 13.165 kb on - strand at 13.214 kb on + strand, within EX28DRAFT_4046 at 13.237 kb on - strand, within EX28DRAFT_4046 at 13.471 kb on - strand, within EX28DRAFT_4046 at 13.473 kb on - strand, within EX28DRAFT_4046 at 13.473 kb on - strand, within EX28DRAFT_4046 at 13.473 kb on - strand, within EX28DRAFT_4046 at 13.605 kb on + strand, within EX28DRAFT_4046 at 13.605 kb on + strand, within EX28DRAFT_4046 at 13.605 kb on + strand, within EX28DRAFT_4046 at 13.629 kb on + strand, within EX28DRAFT_4046 at 13.629 kb on + strand, within EX28DRAFT_4046 at 13.757 kb on - strand, within EX28DRAFT_4046 at 13.767 kb on - strand, within EX28DRAFT_4046 at 13.804 kb on - strand, within EX28DRAFT_4046 at 13.985 kb on - strand, within EX28DRAFT_4046 at 14.045 kb on + strand, within EX28DRAFT_4046 at 14.045 kb on + strand, within EX28DRAFT_4046 at 14.045 kb on + strand, within EX28DRAFT_4046 at 14.046 kb on - strand, within EX28DRAFT_4046 at 14.046 kb on - strand, within EX28DRAFT_4046 at 14.046 kb on - strand, within EX28DRAFT_4046 at 14.053 kb on - strand, within EX28DRAFT_4046 at 14.053 kb on - strand, within EX28DRAFT_4046 at 14.055 kb on + strand, within EX28DRAFT_4046 at 14.055 kb on + strand, within EX28DRAFT_4046 at 14.055 kb on + strand, within EX28DRAFT_4046 at 14.128 kb on + strand at 14.173 kb on - strand at 14.173 kb on - strand at 14.555 kb on + strand, within EX28DRAFT_4047 at 14.555 kb on + strand, within EX28DRAFT_4047 at 14.556 kb on - strand, within EX28DRAFT_4047 at 14.692 kb on + strand, within EX28DRAFT_4047 at 14.693 kb on - strand, within EX28DRAFT_4047 at 14.776 kb on + strand, within EX28DRAFT_4047 at 14.777 kb on - strand, within EX28DRAFT_4047 at 14.777 kb on - strand, within EX28DRAFT_4047 at 14.817 kb on - strand, within EX28DRAFT_4047 at 14.873 kb on + strand, within EX28DRAFT_4047 at 14.900 kb on - strand, within EX28DRAFT_4047 at 15.010 kb on + strand, within EX28DRAFT_4047 at 15.011 kb on - strand, within EX28DRAFT_4047
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 12,066 - EX28DRAFT_4045 0.58 -1.1 12,154 + EX28DRAFT_4045 0.62 +0.8 12,180 + EX28DRAFT_4045 0.63 +0.6 12,180 + EX28DRAFT_4045 0.63 +0.2 12,180 + EX28DRAFT_4045 0.63 +0.9 12,285 + EX28DRAFT_4045 0.68 +1.5 12,285 + EX28DRAFT_4045 0.68 -2.0 12,288 + EX28DRAFT_4045 0.68 +0.4 12,288 + EX28DRAFT_4045 0.68 -1.1 12,289 - EX28DRAFT_4045 0.68 +0.6 12,289 - EX28DRAFT_4045 0.68 -0.4 12,639 - EX28DRAFT_4045 0.83 -0.4 12,729 + EX28DRAFT_4045 0.86 -0.1 12,729 + EX28DRAFT_4045 0.86 +0.1 12,729 + EX28DRAFT_4045 0.86 +0.7 12,891 + +0.2 12,892 - +0.4 12,892 - +1.5 12,892 - +0.9 12,895 - +0.1 12,895 - +0.5 12,895 - +0.2 12,899 - +0.1 12,899 - +0.3 12,899 - -0.5 12,899 - +0.8 13,020 - -0.9 13,155 - +0.0 13,165 - -1.5 13,214 + EX28DRAFT_4046 0.14 +0.1 13,237 - EX28DRAFT_4046 0.16 -1.6 13,471 - EX28DRAFT_4046 0.37 +0.0 13,473 - EX28DRAFT_4046 0.37 -1.5 13,473 - EX28DRAFT_4046 0.37 -1.4 13,473 - EX28DRAFT_4046 0.37 -0.8 13,605 + EX28DRAFT_4046 0.49 -0.0 13,605 + EX28DRAFT_4046 0.49 -1.5 13,605 + EX28DRAFT_4046 0.49 -0.1 13,629 + EX28DRAFT_4046 0.51 +0.4 13,629 + EX28DRAFT_4046 0.51 -0.9 13,757 - EX28DRAFT_4046 0.63 -1.1 13,767 - EX28DRAFT_4046 0.64 -1.8 13,804 - EX28DRAFT_4046 0.67 +0.5 13,985 - EX28DRAFT_4046 0.83 -1.1 14,045 + EX28DRAFT_4046 0.89 +0.2 14,045 + EX28DRAFT_4046 0.89 -0.2 14,045 + EX28DRAFT_4046 0.89 -0.4 14,046 - EX28DRAFT_4046 0.89 -0.7 14,046 - EX28DRAFT_4046 0.89 -1.6 14,046 - EX28DRAFT_4046 0.89 -0.8 14,053 - EX28DRAFT_4046 0.90 -0.5 14,053 - EX28DRAFT_4046 0.90 -1.3 14,055 + EX28DRAFT_4046 0.90 -0.5 14,055 + EX28DRAFT_4046 0.90 +0.1 14,055 + EX28DRAFT_4046 0.90 +0.1 14,128 + -0.3 14,173 - +0.9 14,173 - -0.7 14,555 + EX28DRAFT_4047 0.12 +1.2 14,555 + EX28DRAFT_4047 0.12 -0.1 14,556 - EX28DRAFT_4047 0.12 -0.3 14,692 + EX28DRAFT_4047 0.16 +0.7 14,693 - EX28DRAFT_4047 0.16 +0.3 14,776 + EX28DRAFT_4047 0.18 -0.9 14,777 - EX28DRAFT_4047 0.18 -0.2 14,777 - EX28DRAFT_4047 0.18 -0.1 14,817 - EX28DRAFT_4047 0.19 +0.2 14,873 + EX28DRAFT_4047 0.21 -0.6 14,900 - EX28DRAFT_4047 0.22 +0.1 15,010 + EX28DRAFT_4047 0.25 +0.1 15,011 - EX28DRAFT_4047 0.25 -1.5
Or see this region's nucleotide sequence