Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4036 and EX28DRAFT_4037 overlap by 4 nucleotides EX28DRAFT_4037 and EX28DRAFT_4038 are separated by 16 nucleotides EX28DRAFT_4038 and EX28DRAFT_4039 are separated by 48 nucleotides
EX28DRAFT_4036: EX28DRAFT_4036 - UDP-N-acetylmuramate dehydrogenase (EC 1.1.1.158), at 414 to 1,442
_4036
EX28DRAFT_4037: EX28DRAFT_4037 - birA, biotin-[acetyl-CoA-carboxylase] ligase region/BirA biotin operon repressor domain, at 1,439 to 2,401
_4037
EX28DRAFT_4038: EX28DRAFT_4038 - Glycosyl hydrolases family 8, at 2,418 to 3,410
_4038
EX28DRAFT_4039: EX28DRAFT_4039 - cellulose synthase operon protein YhjU, at 3,459 to 5,138
_4039
Position (kb)
2
3
4 Strain fitness (log2 ratio)
-1
0
1 at 1.450 kb on + strand at 2.413 kb on + strand at 2.505 kb on + strand at 2.506 kb on - strand at 2.689 kb on - strand, within EX28DRAFT_4038 at 2.699 kb on + strand, within EX28DRAFT_4038 at 2.699 kb on + strand, within EX28DRAFT_4038 at 2.832 kb on - strand, within EX28DRAFT_4038 at 2.832 kb on - strand, within EX28DRAFT_4038 at 2.866 kb on - strand, within EX28DRAFT_4038 at 2.907 kb on - strand, within EX28DRAFT_4038 at 2.941 kb on - strand, within EX28DRAFT_4038 at 3.132 kb on + strand, within EX28DRAFT_4038 at 3.132 kb on + strand, within EX28DRAFT_4038 at 3.132 kb on + strand, within EX28DRAFT_4038 at 3.133 kb on - strand, within EX28DRAFT_4038 at 3.157 kb on - strand, within EX28DRAFT_4038 at 3.277 kb on - strand, within EX28DRAFT_4038 at 3.363 kb on + strand at 3.363 kb on + strand at 3.364 kb on - strand at 3.366 kb on + strand at 3.408 kb on + strand at 3.453 kb on - strand at 3.460 kb on + strand at 3.460 kb on + strand at 3.502 kb on + strand at 3.502 kb on + strand at 3.503 kb on - strand at 3.503 kb on - strand at 3.908 kb on + strand, within EX28DRAFT_4039 at 3.908 kb on + strand, within EX28DRAFT_4039 at 3.909 kb on - strand, within EX28DRAFT_4039 at 3.909 kb on - strand, within EX28DRAFT_4039 at 3.909 kb on - strand, within EX28DRAFT_4039 at 3.911 kb on - strand, within EX28DRAFT_4039 at 3.969 kb on - strand, within EX28DRAFT_4039 at 4.243 kb on + strand, within EX28DRAFT_4039
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,450 + +0.2 2,413 + -0.0 2,505 + -0.0 2,506 - -0.9 2,689 - EX28DRAFT_4038 0.27 +0.1 2,699 + EX28DRAFT_4038 0.28 +0.5 2,699 + EX28DRAFT_4038 0.28 -0.2 2,832 - EX28DRAFT_4038 0.42 -0.0 2,832 - EX28DRAFT_4038 0.42 -0.1 2,866 - EX28DRAFT_4038 0.45 -0.5 2,907 - EX28DRAFT_4038 0.49 -0.6 2,941 - EX28DRAFT_4038 0.53 -0.7 3,132 + EX28DRAFT_4038 0.72 -1.7 3,132 + EX28DRAFT_4038 0.72 -0.5 3,132 + EX28DRAFT_4038 0.72 -0.5 3,133 - EX28DRAFT_4038 0.72 +0.0 3,157 - EX28DRAFT_4038 0.74 +0.0 3,277 - EX28DRAFT_4038 0.87 +0.7 3,363 + +0.5 3,363 + +0.5 3,364 - +0.4 3,366 + -1.2 3,408 + -0.8 3,453 - +0.1 3,460 + +0.4 3,460 + +0.0 3,502 + -0.5 3,502 + +0.1 3,503 - +1.4 3,503 - +0.9 3,908 + EX28DRAFT_4039 0.27 -1.4 3,908 + EX28DRAFT_4039 0.27 +0.4 3,909 - EX28DRAFT_4039 0.27 +0.0 3,909 - EX28DRAFT_4039 0.27 +0.0 3,909 - EX28DRAFT_4039 0.27 -0.3 3,911 - EX28DRAFT_4039 0.27 +0.1 3,969 - EX28DRAFT_4039 0.30 -0.8 4,243 + EX28DRAFT_4039 0.47 -0.2
Or see this region's nucleotide sequence