Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4024

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4023 and EX28DRAFT_4024 are separated by 197 nucleotidesEX28DRAFT_4024 and EX28DRAFT_4025 are separated by 7 nucleotides EX28DRAFT_4023: EX28DRAFT_4023 - potassium uptake protein, at 233,986 to 235,854 _4023 EX28DRAFT_4024: EX28DRAFT_4024 - ABC-type ribose transport system, auxiliary component, at 236,052 to 236,471 _4024 EX28DRAFT_4025: EX28DRAFT_4025 - ABC-type sugar transport system, ATPase component, at 236,479 to 237,984 _4025 Position (kb) 236 237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 235.203 kb on + strand, within EX28DRAFT_4023at 235.418 kb on + strand, within EX28DRAFT_4023at 235.418 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.534 kb on + strand, within EX28DRAFT_4023at 235.535 kb on - strand, within EX28DRAFT_4023at 235.696 kb on - strandat 235.736 kb on - strandat 235.759 kb on + strandat 235.759 kb on + strandat 235.759 kb on + strandat 235.852 kb on + strandat 235.853 kb on - strandat 235.921 kb on + strandat 235.922 kb on - strandat 236.213 kb on - strand, within EX28DRAFT_4024at 236.279 kb on + strand, within EX28DRAFT_4024at 236.279 kb on + strand, within EX28DRAFT_4024at 236.280 kb on - strand, within EX28DRAFT_4024at 236.312 kb on + strand, within EX28DRAFT_4024at 236.347 kb on + strand, within EX28DRAFT_4024at 236.347 kb on + strand, within EX28DRAFT_4024at 236.348 kb on - strand, within EX28DRAFT_4024at 236.441 kb on + strandat 236.511 kb on + strandat 236.512 kb on - strandat 236.638 kb on + strand, within EX28DRAFT_4025at 236.639 kb on - strand, within EX28DRAFT_4025at 236.728 kb on - strand, within EX28DRAFT_4025at 236.833 kb on + strand, within EX28DRAFT_4025at 236.833 kb on + strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.877 kb on + strand, within EX28DRAFT_4025at 236.877 kb on + strand, within EX28DRAFT_4025at 237.064 kb on + strand, within EX28DRAFT_4025at 237.064 kb on + strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.065 kb on - strand, within EX28DRAFT_4025at 237.135 kb on + strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.172 kb on - strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.469 kb on + strand, within EX28DRAFT_4025at 237.470 kb on - strand, within EX28DRAFT_4025at 237.470 kb on - strand, within EX28DRAFT_4025

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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235,203 + EX28DRAFT_4023 0.65 -0.3
235,418 + EX28DRAFT_4023 0.77 -0.2
235,418 + EX28DRAFT_4023 0.77 -0.5
235,420 + EX28DRAFT_4023 0.77 -0.8
235,420 + EX28DRAFT_4023 0.77 -3.5
235,420 + EX28DRAFT_4023 0.77 -2.0
235,420 + EX28DRAFT_4023 0.77 -0.5
235,420 + EX28DRAFT_4023 0.77 -1.7
235,420 + EX28DRAFT_4023 0.77 -0.5
235,421 - EX28DRAFT_4023 0.77 -0.6
235,421 - EX28DRAFT_4023 0.77 -0.1
235,421 - EX28DRAFT_4023 0.77 -0.7
235,421 - EX28DRAFT_4023 0.77 +1.3
235,421 - EX28DRAFT_4023 0.77 -0.6
235,421 - EX28DRAFT_4023 0.77 -1.4
235,422 + EX28DRAFT_4023 0.77 -0.5
235,422 + EX28DRAFT_4023 0.77 -0.6
235,422 + EX28DRAFT_4023 0.77 +0.5
235,422 + EX28DRAFT_4023 0.77 -0.3
235,422 + EX28DRAFT_4023 0.77 +0.0
235,422 + EX28DRAFT_4023 0.77 -0.8
235,422 + EX28DRAFT_4023 0.77 -1.6
235,422 + EX28DRAFT_4023 0.77 +0.4
235,423 - EX28DRAFT_4023 0.77 -0.7
235,423 - EX28DRAFT_4023 0.77 -1.0
235,423 - EX28DRAFT_4023 0.77 -0.4
235,423 - EX28DRAFT_4023 0.77 -0.0
235,423 - EX28DRAFT_4023 0.77 +0.3
235,423 - EX28DRAFT_4023 0.77 -3.1
235,423 - EX28DRAFT_4023 0.77 +0.3
235,423 - EX28DRAFT_4023 0.77 +0.2
235,423 - EX28DRAFT_4023 0.77 -0.3
235,423 - EX28DRAFT_4023 0.77 -0.1
235,423 - EX28DRAFT_4023 0.77 -0.7
235,423 - EX28DRAFT_4023 0.77 +0.4
235,423 - EX28DRAFT_4023 0.77 -1.6
235,534 + EX28DRAFT_4023 0.83 -0.6
235,535 - EX28DRAFT_4023 0.83 -0.3
235,696 - +0.8
235,736 - +1.7
235,759 + -0.4
235,759 + -0.9
235,759 + -0.0
235,852 + -0.0
235,853 - -0.1
235,921 + +1.1
235,922 - +0.4
236,213 - EX28DRAFT_4024 0.38 +0.6
236,279 + EX28DRAFT_4024 0.54 -1.4
236,279 + EX28DRAFT_4024 0.54 +0.0
236,280 - EX28DRAFT_4024 0.54 +0.2
236,312 + EX28DRAFT_4024 0.62 -1.2
236,347 + EX28DRAFT_4024 0.70 -0.3
236,347 + EX28DRAFT_4024 0.70 +0.1
236,348 - EX28DRAFT_4024 0.70 +0.1
236,441 + +0.6
236,511 + -0.6
236,512 - +0.7
236,638 + EX28DRAFT_4025 0.11 -0.3
236,639 - EX28DRAFT_4025 0.11 -0.9
236,728 - EX28DRAFT_4025 0.17 +0.3
236,833 + EX28DRAFT_4025 0.24 -1.2
236,833 + EX28DRAFT_4025 0.24 +1.5
236,834 - EX28DRAFT_4025 0.24 +1.9
236,834 - EX28DRAFT_4025 0.24 +1.1
236,834 - EX28DRAFT_4025 0.24 -0.1
236,877 + EX28DRAFT_4025 0.26 -0.4
236,877 + EX28DRAFT_4025 0.26 -0.6
237,064 + EX28DRAFT_4025 0.39 -0.6
237,064 + EX28DRAFT_4025 0.39 -1.1
237,065 - EX28DRAFT_4025 0.39 +0.3
237,065 - EX28DRAFT_4025 0.39 +1.2
237,065 - EX28DRAFT_4025 0.39 +3.0
237,135 + EX28DRAFT_4025 0.44 +1.7
237,172 - EX28DRAFT_4025 0.46 +0.2
237,172 - EX28DRAFT_4025 0.46 +0.3
237,172 - EX28DRAFT_4025 0.46 -0.2
237,469 + EX28DRAFT_4025 0.66 -4.6
237,469 + EX28DRAFT_4025 0.66 -0.8
237,469 + EX28DRAFT_4025 0.66 -0.3
237,469 + EX28DRAFT_4025 0.66 -1.4
237,470 - EX28DRAFT_4025 0.66 +0.3
237,470 - EX28DRAFT_4025 0.66 +0.6

Or see this region's nucleotide sequence