Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3994

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3993 and EX28DRAFT_3994 are separated by 109 nucleotidesEX28DRAFT_3994 and EX28DRAFT_3995 overlap by 32 nucleotides EX28DRAFT_3993: EX28DRAFT_3993 - tRNA modification GTPase TrmE, at 202,358 to 203,722 _3993 EX28DRAFT_3994: EX28DRAFT_3994 - Arabinose efflux permease, at 203,832 to 205,007 _3994 EX28DRAFT_3995: EX28DRAFT_3995 - Transcriptional regulator, at 204,976 to 205,947 _3995 Position (kb) 203 204 205 206Strain fitness (log2 ratio) -2 -1 0 1at 203.720 kb on + strandat 203.720 kb on + strandat 203.720 kb on + strandat 203.721 kb on - strandat 203.721 kb on - strandat 203.721 kb on - strandat 203.721 kb on - strandat 203.721 kb on - strandat 203.821 kb on - strandat 203.852 kb on + strandat 203.853 kb on - strandat 203.863 kb on + strandat 203.863 kb on + strandat 203.864 kb on - strandat 203.864 kb on - strandat 203.891 kb on + strandat 203.891 kb on + strandat 203.892 kb on - strandat 203.895 kb on + strandat 203.896 kb on - strandat 203.896 kb on - strandat 203.896 kb on - strandat 203.896 kb on - strandat 203.896 kb on - strandat 204.156 kb on + strand, within EX28DRAFT_3994at 204.156 kb on + strand, within EX28DRAFT_3994at 204.156 kb on + strand, within EX28DRAFT_3994at 204.156 kb on + strand, within EX28DRAFT_3994at 204.156 kb on + strand, within EX28DRAFT_3994at 204.345 kb on - strand, within EX28DRAFT_3994at 204.401 kb on + strand, within EX28DRAFT_3994at 204.473 kb on - strand, within EX28DRAFT_3994at 204.495 kb on + strand, within EX28DRAFT_3994at 204.495 kb on + strand, within EX28DRAFT_3994at 204.499 kb on + strand, within EX28DRAFT_3994at 204.552 kb on + strand, within EX28DRAFT_3994at 204.552 kb on + strand, within EX28DRAFT_3994at 204.553 kb on - strand, within EX28DRAFT_3994at 204.571 kb on + strand, within EX28DRAFT_3994at 204.620 kb on - strand, within EX28DRAFT_3994at 204.664 kb on + strand, within EX28DRAFT_3994at 204.664 kb on + strand, within EX28DRAFT_3994at 204.665 kb on - strand, within EX28DRAFT_3994at 204.728 kb on + strand, within EX28DRAFT_3994at 204.932 kb on - strandat 204.932 kb on - strandat 204.946 kb on + strandat 204.946 kb on + strandat 204.947 kb on - strandat 204.947 kb on - strandat 204.947 kb on - strandat 204.950 kb on + strandat 205.096 kb on - strand, within EX28DRAFT_3995at 205.469 kb on + strand, within EX28DRAFT_3995at 205.469 kb on + strand, within EX28DRAFT_3995at 205.470 kb on - strand, within EX28DRAFT_3995at 205.522 kb on + strand, within EX28DRAFT_3995at 205.640 kb on + strand, within EX28DRAFT_3995at 205.705 kb on - strand, within EX28DRAFT_3995at 205.729 kb on + strand, within EX28DRAFT_3995at 205.729 kb on + strand, within EX28DRAFT_3995at 205.729 kb on + strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.730 kb on - strand, within EX28DRAFT_3995at 205.762 kb on + strand, within EX28DRAFT_3995at 205.763 kb on - strand, within EX28DRAFT_3995at 205.834 kb on - strand, within EX28DRAFT_3995at 205.834 kb on - strand, within EX28DRAFT_3995at 205.860 kb on + strandat 205.861 kb on - strandat 205.918 kb on + strandat 205.918 kb on + strandat 205.919 kb on - strandat 205.956 kb on - strandat 205.980 kb on + strandat 205.980 kb on + strandat 205.991 kb on - strandat 205.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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203,720 + -0.2
203,720 + -0.3
203,720 + +0.6
203,721 - +0.2
203,721 - -0.5
203,721 - -0.7
203,721 - +0.3
203,721 - +0.5
203,821 - +0.1
203,852 + -0.1
203,853 - -2.2
203,863 + -0.7
203,863 + -1.2
203,864 - +0.6
203,864 - +0.2
203,891 + +0.0
203,891 + -0.7
203,892 - -0.2
203,895 + -0.4
203,896 - -0.2
203,896 - -0.1
203,896 - +0.5
203,896 - +0.1
203,896 - -0.2
204,156 + EX28DRAFT_3994 0.28 -0.2
204,156 + EX28DRAFT_3994 0.28 -0.4
204,156 + EX28DRAFT_3994 0.28 +0.6
204,156 + EX28DRAFT_3994 0.28 +0.1
204,156 + EX28DRAFT_3994 0.28 +0.5
204,345 - EX28DRAFT_3994 0.44 +0.2
204,401 + EX28DRAFT_3994 0.48 -0.3
204,473 - EX28DRAFT_3994 0.55 -0.3
204,495 + EX28DRAFT_3994 0.56 -0.4
204,495 + EX28DRAFT_3994 0.56 -1.0
204,499 + EX28DRAFT_3994 0.57 -2.0
204,552 + EX28DRAFT_3994 0.61 -0.6
204,552 + EX28DRAFT_3994 0.61 -2.2
204,553 - EX28DRAFT_3994 0.61 -1.0
204,571 + EX28DRAFT_3994 0.63 -0.4
204,620 - EX28DRAFT_3994 0.67 -0.6
204,664 + EX28DRAFT_3994 0.71 +0.3
204,664 + EX28DRAFT_3994 0.71 +0.9
204,665 - EX28DRAFT_3994 0.71 -0.2
204,728 + EX28DRAFT_3994 0.76 +0.2
204,932 - -0.9
204,932 - -0.1
204,946 + -2.3
204,946 + +0.8
204,947 - -0.2
204,947 - +0.1
204,947 - -1.2
204,950 + -0.3
205,096 - EX28DRAFT_3995 0.12 -0.2
205,469 + EX28DRAFT_3995 0.51 +0.1
205,469 + EX28DRAFT_3995 0.51 +0.0
205,470 - EX28DRAFT_3995 0.51 -0.3
205,522 + EX28DRAFT_3995 0.56 +0.3
205,640 + EX28DRAFT_3995 0.68 +0.6
205,705 - EX28DRAFT_3995 0.75 -0.4
205,729 + EX28DRAFT_3995 0.77 +0.4
205,729 + EX28DRAFT_3995 0.77 -0.7
205,729 + EX28DRAFT_3995 0.77 -0.9
205,730 - EX28DRAFT_3995 0.78 +0.8
205,730 - EX28DRAFT_3995 0.78 -0.1
205,730 - EX28DRAFT_3995 0.78 +0.0
205,730 - EX28DRAFT_3995 0.78 -0.1
205,762 + EX28DRAFT_3995 0.81 -0.7
205,763 - EX28DRAFT_3995 0.81 -0.9
205,834 - EX28DRAFT_3995 0.88 -0.6
205,834 - EX28DRAFT_3995 0.88 -0.2
205,860 + +0.3
205,861 - -0.2
205,918 + +0.4
205,918 + +0.0
205,919 - -0.8
205,956 - +0.2
205,980 + +0.5
205,980 + -0.9
205,991 - +0.8
205,998 - -0.3

Or see this region's nucleotide sequence