Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3970 and EX28DRAFT_3971 are separated by 221 nucleotides EX28DRAFT_3971 and EX28DRAFT_3972 overlap by 33 nucleotides
EX28DRAFT_3970: EX28DRAFT_3970 - PTS system, maltose and glucose-specific subfamily, IIC component/PTS system, alpha-glucoside-specific IIBC component, at 178,018 to 179,640
_3970
EX28DRAFT_3971: EX28DRAFT_3971 - Transcriptional regulators, at 179,862 to 180,608
_3971
EX28DRAFT_3972: EX28DRAFT_3972 - Predicted permease, at 180,576 to 182,237
_3972
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.983 kb on + strand, within EX28DRAFT_3970 at 178.983 kb on + strand, within EX28DRAFT_3970 at 178.984 kb on - strand, within EX28DRAFT_3970 at 178.984 kb on - strand, within EX28DRAFT_3970 at 178.985 kb on + strand, within EX28DRAFT_3970 at 178.985 kb on + strand, within EX28DRAFT_3970 at 178.985 kb on + strand, within EX28DRAFT_3970 at 178.985 kb on + strand, within EX28DRAFT_3970 at 178.985 kb on + strand, within EX28DRAFT_3970 at 178.986 kb on - strand, within EX28DRAFT_3970 at 178.986 kb on - strand, within EX28DRAFT_3970 at 179.172 kb on - strand, within EX28DRAFT_3970 at 179.229 kb on + strand, within EX28DRAFT_3970 at 179.626 kb on + strand at 179.626 kb on + strand at 179.667 kb on - strand at 179.682 kb on + strand at 179.682 kb on + strand at 179.682 kb on + strand at 179.683 kb on - strand at 179.720 kb on - strand at 179.917 kb on - strand at 180.219 kb on + strand, within EX28DRAFT_3971 at 180.279 kb on - strand, within EX28DRAFT_3971 at 180.339 kb on + strand, within EX28DRAFT_3971 at 180.378 kb on + strand, within EX28DRAFT_3971 at 180.378 kb on + strand, within EX28DRAFT_3971 at 180.378 kb on + strand, within EX28DRAFT_3971 at 180.379 kb on - strand, within EX28DRAFT_3971 at 180.461 kb on + strand, within EX28DRAFT_3971 at 180.461 kb on + strand, within EX28DRAFT_3971 at 180.522 kb on - strand, within EX28DRAFT_3971 at 180.543 kb on + strand at 180.543 kb on + strand at 180.544 kb on - strand at 180.544 kb on - strand at 180.577 kb on + strand at 180.577 kb on + strand at 180.578 kb on - strand at 180.606 kb on + strand at 180.607 kb on - strand at 180.658 kb on + strand at 180.659 kb on - strand at 180.659 kb on - strand at 180.659 kb on - strand at 180.789 kb on + strand, within EX28DRAFT_3972 at 180.821 kb on + strand, within EX28DRAFT_3972 at 180.821 kb on + strand, within EX28DRAFT_3972 at 180.970 kb on + strand, within EX28DRAFT_3972 at 181.400 kb on + strand, within EX28DRAFT_3972 at 181.401 kb on - strand, within EX28DRAFT_3972 at 181.437 kb on + strand, within EX28DRAFT_3972 at 181.437 kb on + strand, within EX28DRAFT_3972 at 181.514 kb on + strand, within EX28DRAFT_3972 at 181.545 kb on - strand, within EX28DRAFT_3972 at 181.583 kb on + strand, within EX28DRAFT_3972 at 181.583 kb on + strand, within EX28DRAFT_3972 at 181.584 kb on - strand, within EX28DRAFT_3972
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 178,983 + EX28DRAFT_3970 0.59 +0.5 178,983 + EX28DRAFT_3970 0.59 -0.2 178,984 - EX28DRAFT_3970 0.60 -0.3 178,984 - EX28DRAFT_3970 0.60 -0.8 178,985 + EX28DRAFT_3970 0.60 +1.5 178,985 + EX28DRAFT_3970 0.60 -0.2 178,985 + EX28DRAFT_3970 0.60 +0.1 178,985 + EX28DRAFT_3970 0.60 +0.2 178,985 + EX28DRAFT_3970 0.60 +1.7 178,986 - EX28DRAFT_3970 0.60 -0.2 178,986 - EX28DRAFT_3970 0.60 -0.0 179,172 - EX28DRAFT_3970 0.71 -0.4 179,229 + EX28DRAFT_3970 0.75 -1.1 179,626 + +0.3 179,626 + +0.4 179,667 - +1.6 179,682 + -0.7 179,682 + +0.0 179,682 + +0.7 179,683 - +1.5 179,720 - +0.9 179,917 - +0.2 180,219 + EX28DRAFT_3971 0.48 +0.5 180,279 - EX28DRAFT_3971 0.56 +0.5 180,339 + EX28DRAFT_3971 0.64 -0.1 180,378 + EX28DRAFT_3971 0.69 +0.2 180,378 + EX28DRAFT_3971 0.69 +0.2 180,378 + EX28DRAFT_3971 0.69 -0.2 180,379 - EX28DRAFT_3971 0.69 -2.7 180,461 + EX28DRAFT_3971 0.80 +0.6 180,461 + EX28DRAFT_3971 0.80 +2.2 180,522 - EX28DRAFT_3971 0.88 +0.0 180,543 + +1.8 180,543 + +1.0 180,544 - -1.6 180,544 - +0.3 180,577 + +0.2 180,577 + -1.1 180,578 - -0.1 180,606 + +0.6 180,607 - -0.1 180,658 + -0.9 180,659 - -0.4 180,659 - -1.4 180,659 - +0.8 180,789 + EX28DRAFT_3972 0.13 +0.6 180,821 + EX28DRAFT_3972 0.15 -0.2 180,821 + EX28DRAFT_3972 0.15 -0.4 180,970 + EX28DRAFT_3972 0.24 -0.5 181,400 + EX28DRAFT_3972 0.50 -0.1 181,401 - EX28DRAFT_3972 0.50 +0.6 181,437 + EX28DRAFT_3972 0.52 -0.0 181,437 + EX28DRAFT_3972 0.52 +1.8 181,514 + EX28DRAFT_3972 0.56 +2.4 181,545 - EX28DRAFT_3972 0.58 -0.4 181,583 + EX28DRAFT_3972 0.61 -0.6 181,583 + EX28DRAFT_3972 0.61 -0.0 181,584 - EX28DRAFT_3972 0.61 +1.1
Or see this region's nucleotide sequence