Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3962 and EX28DRAFT_3963 overlap by 98 nucleotides EX28DRAFT_3963 and EX28DRAFT_3964 are separated by 84 nucleotides
EX28DRAFT_3962: EX28DRAFT_3962 - Multidrug resistance protein, at 169,834 to 170,991
_3962
EX28DRAFT_3963: EX28DRAFT_3963 - Cellulase (glycosyl hydrolase family 5), at 170,894 to 171,982
_3963
EX28DRAFT_3964: EX28DRAFT_3964 - D-serine deaminase transcriptional activator, at 172,067 to 172,993
_3964
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1 at 169.961 kb on - strand, within EX28DRAFT_3962 at 169.972 kb on + strand, within EX28DRAFT_3962 at 170.176 kb on - strand, within EX28DRAFT_3962 at 170.179 kb on + strand, within EX28DRAFT_3962 at 170.180 kb on - strand, within EX28DRAFT_3962 at 170.404 kb on + strand, within EX28DRAFT_3962 at 170.405 kb on - strand, within EX28DRAFT_3962 at 170.406 kb on + strand, within EX28DRAFT_3962 at 170.544 kb on + strand, within EX28DRAFT_3962 at 170.895 kb on + strand at 171.283 kb on + strand, within EX28DRAFT_3963 at 171.332 kb on - strand, within EX28DRAFT_3963 at 171.364 kb on + strand, within EX28DRAFT_3963 at 171.364 kb on + strand, within EX28DRAFT_3963 at 171.365 kb on - strand, within EX28DRAFT_3963 at 171.493 kb on + strand, within EX28DRAFT_3963 at 171.508 kb on - strand, within EX28DRAFT_3963 at 171.518 kb on + strand, within EX28DRAFT_3963 at 171.559 kb on - strand, within EX28DRAFT_3963 at 171.665 kb on - strand, within EX28DRAFT_3963 at 171.666 kb on + strand, within EX28DRAFT_3963 at 171.667 kb on - strand, within EX28DRAFT_3963 at 171.706 kb on - strand, within EX28DRAFT_3963 at 171.722 kb on + strand, within EX28DRAFT_3963 at 171.967 kb on + strand at 171.968 kb on - strand at 171.996 kb on + strand at 172.010 kb on + strand at 172.016 kb on + strand at 172.017 kb on - strand at 172.044 kb on + strand at 172.057 kb on + strand at 172.057 kb on + strand at 172.060 kb on + strand at 172.060 kb on + strand at 172.107 kb on - strand at 172.141 kb on + strand at 172.141 kb on + strand at 172.142 kb on - strand at 172.142 kb on - strand at 172.142 kb on - strand at 172.142 kb on - strand at 172.143 kb on + strand at 172.143 kb on + strand at 172.143 kb on + strand at 172.143 kb on + strand at 172.143 kb on + strand at 172.144 kb on - strand at 172.144 kb on - strand at 172.144 kb on - strand at 172.146 kb on + strand at 172.295 kb on - strand, within EX28DRAFT_3964 at 172.450 kb on - strand, within EX28DRAFT_3964 at 172.519 kb on + strand, within EX28DRAFT_3964 at 172.932 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 169,961 - EX28DRAFT_3962 0.11 +0.0 169,972 + EX28DRAFT_3962 0.12 +0.4 170,176 - EX28DRAFT_3962 0.30 +0.0 170,179 + EX28DRAFT_3962 0.30 -0.1 170,180 - EX28DRAFT_3962 0.30 +0.0 170,404 + EX28DRAFT_3962 0.49 -0.9 170,405 - EX28DRAFT_3962 0.49 -0.4 170,406 + EX28DRAFT_3962 0.49 -0.2 170,544 + EX28DRAFT_3962 0.61 -0.0 170,895 + -0.5 171,283 + EX28DRAFT_3963 0.36 +0.5 171,332 - EX28DRAFT_3963 0.40 +0.6 171,364 + EX28DRAFT_3963 0.43 -0.1 171,364 + EX28DRAFT_3963 0.43 -0.6 171,365 - EX28DRAFT_3963 0.43 +1.3 171,493 + EX28DRAFT_3963 0.55 -0.2 171,508 - EX28DRAFT_3963 0.56 +0.5 171,518 + EX28DRAFT_3963 0.57 -0.1 171,559 - EX28DRAFT_3963 0.61 +0.3 171,665 - EX28DRAFT_3963 0.71 -0.0 171,666 + EX28DRAFT_3963 0.71 +0.6 171,667 - EX28DRAFT_3963 0.71 -0.1 171,706 - EX28DRAFT_3963 0.75 +0.5 171,722 + EX28DRAFT_3963 0.76 -0.2 171,967 + -0.1 171,968 - -0.1 171,996 + +0.3 172,010 + +0.1 172,016 + +0.1 172,017 - -0.2 172,044 + +0.7 172,057 + +0.1 172,057 + +0.1 172,060 + +0.6 172,060 + +0.4 172,107 - +1.1 172,141 + -0.0 172,141 + +0.0 172,142 - +0.1 172,142 - +0.2 172,142 - -0.2 172,142 - +0.6 172,143 + +0.3 172,143 + -2.5 172,143 + -0.1 172,143 + -0.6 172,143 + +0.1 172,144 - -0.6 172,144 - +0.2 172,144 - -1.4 172,146 + +0.4 172,295 - EX28DRAFT_3964 0.25 -0.5 172,450 - EX28DRAFT_3964 0.41 +0.1 172,519 + EX28DRAFT_3964 0.49 -0.3 172,932 + +0.4
Or see this region's nucleotide sequence