Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3934 and EX28DRAFT_3935 overlap by 1 nucleotides EX28DRAFT_3935 and EX28DRAFT_3936 are separated by 121 nucleotides EX28DRAFT_3936 and EX28DRAFT_3937 are separated by 44 nucleotides
EX28DRAFT_3934: EX28DRAFT_3934 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 142,075 to 145,185
_3934
EX28DRAFT_3935: EX28DRAFT_3935 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 145,185 to 146,549
_3935
EX28DRAFT_3936: EX28DRAFT_3936 - hypothetical protein, at 146,671 to 146,967
_3936
EX28DRAFT_3937: EX28DRAFT_3937 - Transcriptional regulators, at 147,012 to 147,962
_3937
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.331 kb on + strand, within EX28DRAFT_3934 at 144.332 kb on - strand, within EX28DRAFT_3934 at 144.373 kb on + strand, within EX28DRAFT_3934 at 144.373 kb on + strand, within EX28DRAFT_3934 at 144.374 kb on - strand, within EX28DRAFT_3934 at 144.374 kb on - strand, within EX28DRAFT_3934 at 144.374 kb on - strand, within EX28DRAFT_3934 at 144.607 kb on - strand, within EX28DRAFT_3934 at 144.689 kb on - strand, within EX28DRAFT_3934 at 144.733 kb on + strand, within EX28DRAFT_3934 at 144.734 kb on - strand, within EX28DRAFT_3934 at 144.734 kb on - strand, within EX28DRAFT_3934 at 144.835 kb on + strand, within EX28DRAFT_3934 at 145.137 kb on - strand at 145.183 kb on + strand at 145.184 kb on - strand at 145.195 kb on + strand at 145.196 kb on - strand at 145.199 kb on + strand at 145.200 kb on - strand at 145.200 kb on - strand at 145.251 kb on + strand at 146.358 kb on + strand, within EX28DRAFT_3935 at 146.358 kb on + strand, within EX28DRAFT_3935 at 146.404 kb on - strand, within EX28DRAFT_3935 at 146.404 kb on - strand, within EX28DRAFT_3935 at 146.424 kb on + strand at 146.424 kb on + strand at 146.424 kb on + strand at 146.565 kb on - strand at 146.565 kb on - strand at 146.623 kb on + strand at 146.629 kb on + strand at 146.631 kb on + strand at 146.631 kb on + strand at 146.631 kb on + strand at 146.632 kb on - strand at 146.656 kb on + strand at 146.793 kb on + strand, within EX28DRAFT_3936 at 146.794 kb on - strand, within EX28DRAFT_3936 at 146.794 kb on - strand, within EX28DRAFT_3936 at 146.924 kb on - strand, within EX28DRAFT_3936 at 146.963 kb on - strand at 147.058 kb on + strand at 147.058 kb on + strand at 147.058 kb on + strand at 147.058 kb on + strand at 147.058 kb on + strand at 147.059 kb on - strand at 147.059 kb on - strand at 147.059 kb on - strand at 147.128 kb on - strand, within EX28DRAFT_3937 at 147.191 kb on + strand, within EX28DRAFT_3937 at 147.192 kb on - strand, within EX28DRAFT_3937 at 147.302 kb on + strand, within EX28DRAFT_3937 at 147.478 kb on + strand, within EX28DRAFT_3937 at 147.479 kb on - strand, within EX28DRAFT_3937 at 147.482 kb on + strand, within EX28DRAFT_3937 at 147.482 kb on + strand, within EX28DRAFT_3937 at 147.483 kb on - strand, within EX28DRAFT_3937 at 147.483 kb on - strand, within EX28DRAFT_3937 at 147.528 kb on - strand, within EX28DRAFT_3937 at 147.533 kb on + strand, within EX28DRAFT_3937
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 144,331 + EX28DRAFT_3934 0.73 -1.8 144,332 - EX28DRAFT_3934 0.73 -0.3 144,373 + EX28DRAFT_3934 0.74 +0.1 144,373 + EX28DRAFT_3934 0.74 +1.1 144,374 - EX28DRAFT_3934 0.74 -0.3 144,374 - EX28DRAFT_3934 0.74 +0.1 144,374 - EX28DRAFT_3934 0.74 +0.5 144,607 - EX28DRAFT_3934 0.81 +0.2 144,689 - EX28DRAFT_3934 0.84 +0.0 144,733 + EX28DRAFT_3934 0.85 -0.2 144,734 - EX28DRAFT_3934 0.85 -0.2 144,734 - EX28DRAFT_3934 0.85 +0.6 144,835 + EX28DRAFT_3934 0.89 -0.4 145,137 - +0.5 145,183 + +1.8 145,184 - -0.2 145,195 + +0.1 145,196 - +0.3 145,199 + -0.3 145,200 - +1.1 145,200 - -0.1 145,251 + +0.7 146,358 + EX28DRAFT_3935 0.86 +0.2 146,358 + EX28DRAFT_3935 0.86 -0.3 146,404 - EX28DRAFT_3935 0.89 -0.4 146,404 - EX28DRAFT_3935 0.89 -1.7 146,424 + +0.6 146,424 + +1.3 146,424 + +0.2 146,565 - +0.8 146,565 - -2.1 146,623 + +0.5 146,629 + +0.6 146,631 + +0.5 146,631 + -0.6 146,631 + +0.6 146,632 - -0.0 146,656 + +0.6 146,793 + EX28DRAFT_3936 0.41 +0.4 146,794 - EX28DRAFT_3936 0.41 +0.1 146,794 - EX28DRAFT_3936 0.41 +1.6 146,924 - EX28DRAFT_3936 0.85 -0.3 146,963 - -0.3 147,058 + +0.1 147,058 + +0.7 147,058 + +0.1 147,058 + -0.2 147,058 + -0.5 147,059 - +0.9 147,059 - +0.1 147,059 - -1.2 147,128 - EX28DRAFT_3937 0.12 -0.5 147,191 + EX28DRAFT_3937 0.19 -0.8 147,192 - EX28DRAFT_3937 0.19 +0.7 147,302 + EX28DRAFT_3937 0.30 +1.4 147,478 + EX28DRAFT_3937 0.49 -0.5 147,479 - EX28DRAFT_3937 0.49 +0.3 147,482 + EX28DRAFT_3937 0.49 -1.3 147,482 + EX28DRAFT_3937 0.49 -0.6 147,483 - EX28DRAFT_3937 0.50 +0.0 147,483 - EX28DRAFT_3937 0.50 +0.2 147,528 - EX28DRAFT_3937 0.54 +0.6 147,533 + EX28DRAFT_3937 0.55 -0.0
Or see this region's nucleotide sequence