Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3895

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3894 and EX28DRAFT_3895 are separated by 205 nucleotidesEX28DRAFT_3895 and EX28DRAFT_3896 are separated by 2 nucleotides EX28DRAFT_3894: EX28DRAFT_3894 - TIGR00255 family protein, at 101,533 to 102,396 _3894 EX28DRAFT_3895: EX28DRAFT_3895 - Predicted membrane protein, at 102,602 to 103,219 _3895 EX28DRAFT_3896: EX28DRAFT_3896 - NAD-dependent DNA ligase (contains BRCT domain type II), at 103,222 to 104,892 _3896 Position (kb) 102 103 104Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 101.678 kb on + strand, within EX28DRAFT_3894at 101.679 kb on - strand, within EX28DRAFT_3894at 101.694 kb on + strand, within EX28DRAFT_3894at 101.694 kb on + strand, within EX28DRAFT_3894at 101.695 kb on - strand, within EX28DRAFT_3894at 101.724 kb on + strand, within EX28DRAFT_3894at 101.724 kb on + strand, within EX28DRAFT_3894at 101.725 kb on - strand, within EX28DRAFT_3894at 101.856 kb on + strand, within EX28DRAFT_3894at 101.856 kb on + strand, within EX28DRAFT_3894at 101.861 kb on + strand, within EX28DRAFT_3894at 101.862 kb on - strand, within EX28DRAFT_3894at 102.052 kb on - strand, within EX28DRAFT_3894at 102.062 kb on + strand, within EX28DRAFT_3894at 102.062 kb on + strand, within EX28DRAFT_3894at 102.165 kb on + strand, within EX28DRAFT_3894at 102.166 kb on - strand, within EX28DRAFT_3894at 102.166 kb on - strand, within EX28DRAFT_3894at 102.217 kb on + strand, within EX28DRAFT_3894at 102.218 kb on - strand, within EX28DRAFT_3894at 102.264 kb on + strand, within EX28DRAFT_3894at 102.264 kb on + strand, within EX28DRAFT_3894at 102.264 kb on + strand, within EX28DRAFT_3894at 102.599 kb on + strandat 102.599 kb on + strandat 102.601 kb on + strandat 102.601 kb on + strandat 102.602 kb on - strandat 102.602 kb on - strandat 102.602 kb on - strandat 102.709 kb on + strand, within EX28DRAFT_3895at 102.792 kb on - strand, within EX28DRAFT_3895at 102.800 kb on - strand, within EX28DRAFT_3895at 103.003 kb on + strand, within EX28DRAFT_3895at 103.004 kb on - strand, within EX28DRAFT_3895at 103.046 kb on + strand, within EX28DRAFT_3895at 103.079 kb on + strand, within EX28DRAFT_3895at 103.079 kb on + strand, within EX28DRAFT_3895at 103.080 kb on - strand, within EX28DRAFT_3895at 103.080 kb on - strand, within EX28DRAFT_3895at 103.082 kb on - strand, within EX28DRAFT_3895at 103.082 kb on - strand, within EX28DRAFT_3895at 103.097 kb on + strand, within EX28DRAFT_3895at 103.120 kb on - strand, within EX28DRAFT_3895at 103.217 kb on + strandat 103.378 kb on + strandat 103.379 kb on - strandat 103.467 kb on + strand, within EX28DRAFT_3896at 103.468 kb on - strand, within EX28DRAFT_3896at 103.468 kb on - strand, within EX28DRAFT_3896at 103.516 kb on - strand, within EX28DRAFT_3896at 103.540 kb on + strand, within EX28DRAFT_3896at 103.541 kb on - strand, within EX28DRAFT_3896at 103.710 kb on - strand, within EX28DRAFT_3896at 103.734 kb on + strand, within EX28DRAFT_3896at 103.734 kb on + strand, within EX28DRAFT_3896at 103.735 kb on - strand, within EX28DRAFT_3896at 103.735 kb on - strand, within EX28DRAFT_3896at 103.764 kb on + strand, within EX28DRAFT_3896at 103.830 kb on + strand, within EX28DRAFT_3896at 103.878 kb on + strand, within EX28DRAFT_3896at 103.909 kb on + strand, within EX28DRAFT_3896at 103.909 kb on + strand, within EX28DRAFT_3896at 103.910 kb on - strand, within EX28DRAFT_3896at 104.199 kb on + strand, within EX28DRAFT_3896at 104.199 kb on + strand, within EX28DRAFT_3896at 104.199 kb on + strand, within EX28DRAFT_3896at 104.199 kb on + strand, within EX28DRAFT_3896at 104.200 kb on - strand, within EX28DRAFT_3896at 104.206 kb on - strand, within EX28DRAFT_3896at 104.206 kb on - strand, within EX28DRAFT_3896

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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101,678 + EX28DRAFT_3894 0.17 -0.4
101,679 - EX28DRAFT_3894 0.17 -2.7
101,694 + EX28DRAFT_3894 0.19 -0.3
101,694 + EX28DRAFT_3894 0.19 +0.8
101,695 - EX28DRAFT_3894 0.19 -3.2
101,724 + EX28DRAFT_3894 0.22 -1.8
101,724 + EX28DRAFT_3894 0.22 -1.2
101,725 - EX28DRAFT_3894 0.22 -0.4
101,856 + EX28DRAFT_3894 0.37 -0.1
101,856 + EX28DRAFT_3894 0.37 -1.0
101,861 + EX28DRAFT_3894 0.38 -0.8
101,862 - EX28DRAFT_3894 0.38 +0.1
102,052 - EX28DRAFT_3894 0.60 -0.1
102,062 + EX28DRAFT_3894 0.61 -0.8
102,062 + EX28DRAFT_3894 0.61 -0.8
102,165 + EX28DRAFT_3894 0.73 -1.2
102,166 - EX28DRAFT_3894 0.73 -0.4
102,166 - EX28DRAFT_3894 0.73 -0.1
102,217 + EX28DRAFT_3894 0.79 +0.2
102,218 - EX28DRAFT_3894 0.79 +0.1
102,264 + EX28DRAFT_3894 0.85 -0.1
102,264 + EX28DRAFT_3894 0.85 -0.4
102,264 + EX28DRAFT_3894 0.85 +0.3
102,599 + +0.5
102,599 + -0.7
102,601 + +0.4
102,601 + +0.0
102,602 - +0.6
102,602 - +1.0
102,602 - -0.3
102,709 + EX28DRAFT_3895 0.17 +0.1
102,792 - EX28DRAFT_3895 0.31 +0.4
102,800 - EX28DRAFT_3895 0.32 +1.1
103,003 + EX28DRAFT_3895 0.65 +0.1
103,004 - EX28DRAFT_3895 0.65 +0.4
103,046 + EX28DRAFT_3895 0.72 -0.9
103,079 + EX28DRAFT_3895 0.77 +0.3
103,079 + EX28DRAFT_3895 0.77 -0.3
103,080 - EX28DRAFT_3895 0.77 +1.0
103,080 - EX28DRAFT_3895 0.77 +0.8
103,082 - EX28DRAFT_3895 0.78 +0.1
103,082 - EX28DRAFT_3895 0.78 +1.8
103,097 + EX28DRAFT_3895 0.80 -0.2
103,120 - EX28DRAFT_3895 0.84 -0.0
103,217 + +0.4
103,378 + -0.3
103,379 - +0.2
103,467 + EX28DRAFT_3896 0.15 +0.7
103,468 - EX28DRAFT_3896 0.15 -0.7
103,468 - EX28DRAFT_3896 0.15 -1.0
103,516 - EX28DRAFT_3896 0.18 +0.3
103,540 + EX28DRAFT_3896 0.19 +0.4
103,541 - EX28DRAFT_3896 0.19 -0.1
103,710 - EX28DRAFT_3896 0.29 -0.0
103,734 + EX28DRAFT_3896 0.31 -0.2
103,734 + EX28DRAFT_3896 0.31 -0.1
103,735 - EX28DRAFT_3896 0.31 +0.0
103,735 - EX28DRAFT_3896 0.31 -0.1
103,764 + EX28DRAFT_3896 0.32 -0.4
103,830 + EX28DRAFT_3896 0.36 -2.0
103,878 + EX28DRAFT_3896 0.39 -0.4
103,909 + EX28DRAFT_3896 0.41 +0.3
103,909 + EX28DRAFT_3896 0.41 +0.6
103,910 - EX28DRAFT_3896 0.41 +0.5
104,199 + EX28DRAFT_3896 0.58 +0.6
104,199 + EX28DRAFT_3896 0.58 -0.4
104,199 + EX28DRAFT_3896 0.58 +0.4
104,199 + EX28DRAFT_3896 0.58 -0.9
104,200 - EX28DRAFT_3896 0.59 -0.1
104,206 - EX28DRAFT_3896 0.59 +3.1
104,206 - EX28DRAFT_3896 0.59 -0.3

Or see this region's nucleotide sequence