Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3879

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3878 and EX28DRAFT_3879 overlap by 4 nucleotidesEX28DRAFT_3879 and EX28DRAFT_3880 are separated by 2 nucleotides EX28DRAFT_3878: EX28DRAFT_3878 - lipopolysaccharide heptosyltransferase III, putative, at 88,314 to 89,384 _3878 EX28DRAFT_3879: EX28DRAFT_3879 - Glycosyltransferase, at 89,381 to 90,508 _3879 EX28DRAFT_3880: EX28DRAFT_3880 - Glycosyltransferase, at 90,511 to 91,611 _3880 Position (kb) 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1at 88.523 kb on + strand, within EX28DRAFT_3878at 88.523 kb on + strand, within EX28DRAFT_3878at 88.700 kb on + strand, within EX28DRAFT_3878at 88.701 kb on - strand, within EX28DRAFT_3878at 88.798 kb on + strand, within EX28DRAFT_3878at 88.834 kb on - strand, within EX28DRAFT_3878at 88.896 kb on + strand, within EX28DRAFT_3878at 88.896 kb on + strand, within EX28DRAFT_3878at 88.897 kb on - strand, within EX28DRAFT_3878at 88.897 kb on - strand, within EX28DRAFT_3878at 88.931 kb on + strand, within EX28DRAFT_3878at 88.991 kb on + strand, within EX28DRAFT_3878at 89.095 kb on + strand, within EX28DRAFT_3878at 89.095 kb on + strand, within EX28DRAFT_3878at 89.168 kb on + strand, within EX28DRAFT_3878at 89.373 kb on + strandat 89.373 kb on + strandat 89.373 kb on + strandat 89.374 kb on - strandat 89.675 kb on + strand, within EX28DRAFT_3879at 89.676 kb on - strand, within EX28DRAFT_3879at 89.760 kb on - strand, within EX28DRAFT_3879at 89.805 kb on - strand, within EX28DRAFT_3879at 90.230 kb on + strand, within EX28DRAFT_3879at 90.231 kb on - strand, within EX28DRAFT_3879at 90.521 kb on + strandat 90.528 kb on + strandat 90.528 kb on + strandat 90.529 kb on - strandat 90.529 kb on - strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.570 kb on + strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.571 kb on - strandat 90.588 kb on - strandat 90.590 kb on + strandat 90.590 kb on + strandat 90.590 kb on + strandat 90.614 kb on + strandat 90.614 kb on + strandat 90.615 kb on - strandat 90.615 kb on - strandat 90.687 kb on + strand, within EX28DRAFT_3880at 90.687 kb on + strand, within EX28DRAFT_3880at 90.687 kb on + strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.688 kb on - strand, within EX28DRAFT_3880at 90.887 kb on - strand, within EX28DRAFT_3880at 90.921 kb on + strand, within EX28DRAFT_3880at 90.922 kb on - strand, within EX28DRAFT_3880at 90.930 kb on + strand, within EX28DRAFT_3880at 90.931 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.943 kb on - strand, within EX28DRAFT_3880at 90.946 kb on + strand, within EX28DRAFT_3880at 91.042 kb on - strand, within EX28DRAFT_3880at 91.108 kb on + strand, within EX28DRAFT_3880at 91.108 kb on + strand, within EX28DRAFT_3880at 91.109 kb on - strand, within EX28DRAFT_3880at 91.113 kb on + strand, within EX28DRAFT_3880at 91.113 kb on + strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.114 kb on - strand, within EX28DRAFT_3880at 91.160 kb on + strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.161 kb on - strand, within EX28DRAFT_3880at 91.334 kb on + strand, within EX28DRAFT_3880at 91.335 kb on - strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.340 kb on + strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.341 kb on - strand, within EX28DRAFT_3880at 91.366 kb on - strand, within EX28DRAFT_3880at 91.386 kb on + strand, within EX28DRAFT_3880at 91.386 kb on + strand, within EX28DRAFT_3880at 91.411 kb on - strand, within EX28DRAFT_3880at 91.411 kb on - strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.475 kb on + strand, within EX28DRAFT_3880at 91.476 kb on - strand, within EX28DRAFT_3880at 91.476 kb on - strand, within EX28DRAFT_3880

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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88,523 + EX28DRAFT_3878 0.20 -0.7
88,523 + EX28DRAFT_3878 0.20 -0.7
88,700 + EX28DRAFT_3878 0.36 -0.8
88,701 - EX28DRAFT_3878 0.36 -1.9
88,798 + EX28DRAFT_3878 0.45 -2.0
88,834 - EX28DRAFT_3878 0.49 -2.6
88,896 + EX28DRAFT_3878 0.54 +0.2
88,896 + EX28DRAFT_3878 0.54 +0.1
88,897 - EX28DRAFT_3878 0.54 -0.8
88,897 - EX28DRAFT_3878 0.54 +0.4
88,931 + EX28DRAFT_3878 0.58 -0.6
88,991 + EX28DRAFT_3878 0.63 +0.0
89,095 + EX28DRAFT_3878 0.73 +0.6
89,095 + EX28DRAFT_3878 0.73 -0.4
89,168 + EX28DRAFT_3878 0.80 -2.7
89,373 + -0.8
89,373 + +0.7
89,373 + -1.0
89,374 - -1.5
89,675 + EX28DRAFT_3879 0.26 -3.7
89,676 - EX28DRAFT_3879 0.26 -2.4
89,760 - EX28DRAFT_3879 0.34 +0.6
89,805 - EX28DRAFT_3879 0.38 -3.1
90,230 + EX28DRAFT_3879 0.75 -1.4
90,231 - EX28DRAFT_3879 0.75 -1.3
90,521 + -0.2
90,528 + -0.2
90,528 + -1.0
90,529 - +0.2
90,529 - +0.6
90,570 + +0.2
90,570 + +0.8
90,570 + +0.6
90,570 + -0.1
90,570 + -0.2
90,570 + +0.0
90,570 + +0.4
90,571 - +0.2
90,571 - -0.4
90,571 - -0.5
90,571 - +0.1
90,571 - -0.3
90,571 - +0.1
90,571 - +0.7
90,571 - +0.5
90,588 - +0.1
90,590 + -0.4
90,590 + +0.9
90,590 + -0.4
90,614 + -0.1
90,614 + +0.2
90,615 - -1.1
90,615 - +0.2
90,687 + EX28DRAFT_3880 0.16 -0.8
90,687 + EX28DRAFT_3880 0.16 -2.1
90,687 + EX28DRAFT_3880 0.16 +0.2
90,688 - EX28DRAFT_3880 0.16 +0.2
90,688 - EX28DRAFT_3880 0.16 +0.9
90,688 - EX28DRAFT_3880 0.16 +0.1
90,887 - EX28DRAFT_3880 0.34 -2.0
90,921 + EX28DRAFT_3880 0.37 +0.1
90,922 - EX28DRAFT_3880 0.37 +0.1
90,930 + EX28DRAFT_3880 0.38 +0.3
90,931 - EX28DRAFT_3880 0.38 +0.4
90,943 - EX28DRAFT_3880 0.39 -0.1
90,943 - EX28DRAFT_3880 0.39 -0.4
90,943 - EX28DRAFT_3880 0.39 -0.7
90,946 + EX28DRAFT_3880 0.40 -0.9
91,042 - EX28DRAFT_3880 0.48 -0.0
91,108 + EX28DRAFT_3880 0.54 +0.1
91,108 + EX28DRAFT_3880 0.54 -0.8
91,109 - EX28DRAFT_3880 0.54 -0.0
91,113 + EX28DRAFT_3880 0.55 +0.4
91,113 + EX28DRAFT_3880 0.55 +0.5
91,114 - EX28DRAFT_3880 0.55 -0.1
91,114 - EX28DRAFT_3880 0.55 -0.1
91,114 - EX28DRAFT_3880 0.55 -0.2
91,114 - EX28DRAFT_3880 0.55 +0.0
91,160 + EX28DRAFT_3880 0.59 -1.1
91,161 - EX28DRAFT_3880 0.59 -1.6
91,161 - EX28DRAFT_3880 0.59 -0.2
91,161 - EX28DRAFT_3880 0.59 -0.7
91,334 + EX28DRAFT_3880 0.75 -1.4
91,335 - EX28DRAFT_3880 0.75 -0.1
91,340 + EX28DRAFT_3880 0.75 -0.4
91,340 + EX28DRAFT_3880 0.75 +0.2
91,340 + EX28DRAFT_3880 0.75 +0.0
91,340 + EX28DRAFT_3880 0.75 -0.4
91,341 - EX28DRAFT_3880 0.75 -1.0
91,341 - EX28DRAFT_3880 0.75 -0.3
91,341 - EX28DRAFT_3880 0.75 -0.3
91,366 - EX28DRAFT_3880 0.78 -1.0
91,386 + EX28DRAFT_3880 0.79 -0.2
91,386 + EX28DRAFT_3880 0.79 +0.0
91,411 - EX28DRAFT_3880 0.82 +0.4
91,411 - EX28DRAFT_3880 0.82 +0.3
91,475 + EX28DRAFT_3880 0.88 +0.3
91,475 + EX28DRAFT_3880 0.88 -0.3
91,475 + EX28DRAFT_3880 0.88 -0.2
91,476 - EX28DRAFT_3880 0.88 +0.1
91,476 - EX28DRAFT_3880 0.88 -0.0

Or see this region's nucleotide sequence