Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3851 and EX28DRAFT_3852 are separated by 58 nucleotides EX28DRAFT_3852 and EX28DRAFT_3853 are separated by 336 nucleotides EX28DRAFT_3853 and EX28DRAFT_3854 overlap by 4 nucleotides EX28DRAFT_3854 and EX28DRAFT_3855 overlap by 4 nucleotides
EX28DRAFT_3851: EX28DRAFT_3851 - Transcriptional regulator, at 61,237 to 61,827
_3851
EX28DRAFT_3852: EX28DRAFT_3852 - Protein of unknown function (DUF2810), at 61,886 to 62,248
_3852
EX28DRAFT_3853: EX28DRAFT_3853 - L-lactate transport, at 62,585 to 64,240
_3853
EX28DRAFT_3854: EX28DRAFT_3854 - Transcriptional regulators, at 64,237 to 65,010
_3854
EX28DRAFT_3855: EX28DRAFT_3855 - L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases, at 65,007 to 66,194
_3855
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 61.618 kb on + strand, within EX28DRAFT_3851 at 61.825 kb on + strand at 61.825 kb on + strand at 61.825 kb on + strand at 61.825 kb on + strand at 61.825 kb on + strand at 61.826 kb on - strand at 61.878 kb on + strand at 61.879 kb on - strand at 61.989 kb on - strand, within EX28DRAFT_3852 at 61.989 kb on - strand, within EX28DRAFT_3852 at 62.234 kb on - strand at 62.249 kb on + strand at 62.249 kb on + strand at 62.250 kb on - strand at 62.298 kb on + strand at 62.299 kb on - strand at 62.299 kb on - strand at 62.757 kb on - strand, within EX28DRAFT_3853 at 62.759 kb on - strand, within EX28DRAFT_3853 at 62.759 kb on - strand, within EX28DRAFT_3853 at 62.857 kb on + strand, within EX28DRAFT_3853 at 63.180 kb on + strand, within EX28DRAFT_3853 at 63.399 kb on + strand, within EX28DRAFT_3853 at 63.404 kb on - strand, within EX28DRAFT_3853 at 63.404 kb on - strand, within EX28DRAFT_3853 at 63.663 kb on - strand, within EX28DRAFT_3853 at 63.790 kb on + strand, within EX28DRAFT_3853 at 63.791 kb on - strand, within EX28DRAFT_3853 at 63.812 kb on + strand, within EX28DRAFT_3853 at 63.855 kb on - strand, within EX28DRAFT_3853 at 64.215 kb on - strand at 64.221 kb on + strand at 64.241 kb on + strand at 64.241 kb on + strand at 64.242 kb on - strand at 64.526 kb on - strand, within EX28DRAFT_3854 at 64.792 kb on + strand, within EX28DRAFT_3854 at 64.793 kb on - strand, within EX28DRAFT_3854 at 64.959 kb on + strand at 64.959 kb on + strand at 64.987 kb on - strand at 65.012 kb on + strand at 65.012 kb on + strand at 65.012 kb on + strand at 65.012 kb on + strand at 65.076 kb on + strand at 65.076 kb on + strand at 65.076 kb on + strand at 65.168 kb on + strand, within EX28DRAFT_3855 at 65.168 kb on + strand, within EX28DRAFT_3855
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 61,618 + EX28DRAFT_3851 0.64 -0.9 61,825 + +0.4 61,825 + -0.1 61,825 + +0.0 61,825 + +1.5 61,825 + +0.7 61,826 - +0.2 61,878 + -0.5 61,879 - -3.1 61,989 - EX28DRAFT_3852 0.28 +0.3 61,989 - EX28DRAFT_3852 0.28 +0.4 62,234 - -0.3 62,249 + -0.9 62,249 + -1.0 62,250 - -0.1 62,298 + +0.1 62,299 - -3.7 62,299 - -0.0 62,757 - EX28DRAFT_3853 0.10 -0.4 62,759 - EX28DRAFT_3853 0.11 -0.5 62,759 - EX28DRAFT_3853 0.11 +0.3 62,857 + EX28DRAFT_3853 0.16 +0.4 63,180 + EX28DRAFT_3853 0.36 +0.0 63,399 + EX28DRAFT_3853 0.49 +0.2 63,404 - EX28DRAFT_3853 0.49 -1.6 63,404 - EX28DRAFT_3853 0.49 -0.9 63,663 - EX28DRAFT_3853 0.65 +0.4 63,790 + EX28DRAFT_3853 0.73 +0.2 63,791 - EX28DRAFT_3853 0.73 +0.0 63,812 + EX28DRAFT_3853 0.74 -0.3 63,855 - EX28DRAFT_3853 0.77 -1.7 64,215 - +1.3 64,221 + -3.2 64,241 + -0.3 64,241 + +0.5 64,242 - -0.1 64,526 - EX28DRAFT_3854 0.37 -0.4 64,792 + EX28DRAFT_3854 0.72 -0.7 64,793 - EX28DRAFT_3854 0.72 -0.3 64,959 + -2.2 64,959 + +0.7 64,987 - +1.3 65,012 + -0.6 65,012 + -0.3 65,012 + +0.3 65,012 + +0.0 65,076 + +0.3 65,076 + +0.3 65,076 + +0.0 65,168 + EX28DRAFT_3855 0.14 -0.3 65,168 + EX28DRAFT_3855 0.14 -0.4
Or see this region's nucleotide sequence