Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3850 and EX28DRAFT_3851 overlap by 4 nucleotides EX28DRAFT_3851 and EX28DRAFT_3852 are separated by 58 nucleotides EX28DRAFT_3852 and EX28DRAFT_3853 are separated by 336 nucleotides
EX28DRAFT_3850: EX28DRAFT_3850 - Mannitol-1-phosphate/altronate dehydrogenases, at 60,092 to 61,240
_3850
EX28DRAFT_3851: EX28DRAFT_3851 - Transcriptional regulator, at 61,237 to 61,827
_3851
EX28DRAFT_3852: EX28DRAFT_3852 - Protein of unknown function (DUF2810), at 61,886 to 62,248
_3852
EX28DRAFT_3853: EX28DRAFT_3853 - L-lactate transport, at 62,585 to 64,240
_3853
Position (kb) 61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 61.223 kb on + strand at 61.223 kb on + strand at 61.224 kb on - strand at 61.224 kb on - strand at 61.276 kb on - strand at 61.278 kb on + strand at 61.278 kb on + strand at 61.278 kb on + strand at 61.278 kb on + strand at 61.279 kb on - strand at 61.291 kb on - strand at 61.291 kb on - strand at 61.291 kb on - strand at 61.413 kb on + strand, within EX28DRAFT_3851 at 61.447 kb on + strand, within EX28DRAFT_3851 at 61.448 kb on - strand, within EX28DRAFT_3851 at 61.459 kb on + strand, within EX28DRAFT_3851 at 61.459 kb on + strand, within EX28DRAFT_3851 at 61.459 kb on + strand, within EX28DRAFT_3851 at 61.459 kb on + strand, within EX28DRAFT_3851 at 61.466 kb on + strand, within EX28DRAFT_3851 at 61.528 kb on + strand, within EX28DRAFT_3851 at 61.558 kb on + strand, within EX28DRAFT_3851 at 61.558 kb on + strand, within EX28DRAFT_3851 at 61.558 kb on + strand, within EX28DRAFT_3851 at 61.558 kb on + strand, within EX28DRAFT_3851 at 61.559 kb on - strand, within EX28DRAFT_3851 at 61.559 kb on - strand, within EX28DRAFT_3851 at 61.618 kb on + strand, within EX28DRAFT_3851 at 61.825 kb on + strand at 61.825 kb on + strand at 61.825 kb on + strand at 61.825 kb on + strand at 61.825 kb on + strand at 61.826 kb on - strand at 61.878 kb on + strand at 61.879 kb on - strand at 61.989 kb on - strand, within EX28DRAFT_3852 at 61.989 kb on - strand, within EX28DRAFT_3852 at 62.234 kb on - strand at 62.249 kb on + strand at 62.249 kb on + strand at 62.250 kb on - strand at 62.298 kb on + strand at 62.299 kb on - strand at 62.299 kb on - strand at 62.757 kb on - strand, within EX28DRAFT_3853 at 62.759 kb on - strand, within EX28DRAFT_3853 at 62.759 kb on - strand, within EX28DRAFT_3853 at 62.857 kb on + strand, within EX28DRAFT_3853 at 63.180 kb on + strand, within EX28DRAFT_3853
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 61,223 + +1.4 61,223 + +0.3 61,224 - -0.3 61,224 - +0.7 61,276 - -1.7 61,278 + -0.2 61,278 + +0.0 61,278 + -0.9 61,278 + -0.3 61,279 - +0.4 61,291 - -1.0 61,291 - -1.1 61,291 - +0.2 61,413 + EX28DRAFT_3851 0.30 -0.8 61,447 + EX28DRAFT_3851 0.36 +3.6 61,448 - EX28DRAFT_3851 0.36 +0.0 61,459 + EX28DRAFT_3851 0.38 -0.5 61,459 + EX28DRAFT_3851 0.38 -1.4 61,459 + EX28DRAFT_3851 0.38 -0.3 61,459 + EX28DRAFT_3851 0.38 -0.9 61,466 + EX28DRAFT_3851 0.39 -0.4 61,528 + EX28DRAFT_3851 0.49 -0.3 61,558 + EX28DRAFT_3851 0.54 -0.4 61,558 + EX28DRAFT_3851 0.54 -0.7 61,558 + EX28DRAFT_3851 0.54 +0.5 61,558 + EX28DRAFT_3851 0.54 +0.1 61,559 - EX28DRAFT_3851 0.54 -0.4 61,559 - EX28DRAFT_3851 0.54 +1.4 61,618 + EX28DRAFT_3851 0.64 -0.9 61,825 + +0.4 61,825 + -0.1 61,825 + +0.0 61,825 + +1.5 61,825 + +0.7 61,826 - +0.2 61,878 + -0.5 61,879 - -3.1 61,989 - EX28DRAFT_3852 0.28 +0.3 61,989 - EX28DRAFT_3852 0.28 +0.4 62,234 - -0.3 62,249 + -0.9 62,249 + -1.0 62,250 - -0.1 62,298 + +0.1 62,299 - -3.7 62,299 - -0.0 62,757 - EX28DRAFT_3853 0.10 -0.4 62,759 - EX28DRAFT_3853 0.11 -0.5 62,759 - EX28DRAFT_3853 0.11 +0.3 62,857 + EX28DRAFT_3853 0.16 +0.4 63,180 + EX28DRAFT_3853 0.36 +0.0
Or see this region's nucleotide sequence