Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3834

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3833 and EX28DRAFT_3834 are separated by 33 nucleotidesEX28DRAFT_3834 and EX28DRAFT_3835 are separated by 39 nucleotides EX28DRAFT_3833: EX28DRAFT_3833 - ABC-type xylose transport system, permease component, at 38,627 to 39,808 _3833 EX28DRAFT_3834: EX28DRAFT_3834 - Transcriptional regulators, at 39,842 to 41,020 _3834 EX28DRAFT_3835: EX28DRAFT_3835 - Uncharacterized FlgJ-related protein, at 41,060 to 41,884 _3835 Position (kb) 39 40 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 39.164 kb on - strand, within EX28DRAFT_3833at 39.164 kb on - strand, within EX28DRAFT_3833at 39.175 kb on + strand, within EX28DRAFT_3833at 39.330 kb on + strand, within EX28DRAFT_3833at 39.379 kb on - strand, within EX28DRAFT_3833at 39.397 kb on + strand, within EX28DRAFT_3833at 39.427 kb on + strand, within EX28DRAFT_3833at 39.431 kb on + strand, within EX28DRAFT_3833at 39.431 kb on + strand, within EX28DRAFT_3833at 39.431 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.683 kb on - strand, within EX28DRAFT_3833at 39.683 kb on - strand, within EX28DRAFT_3833at 39.683 kb on - strand, within EX28DRAFT_3833at 39.712 kb on + strandat 39.712 kb on + strandat 39.713 kb on - strandat 39.740 kb on + strandat 39.740 kb on + strandat 39.766 kb on - strandat 39.816 kb on - strandat 39.816 kb on - strandat 39.825 kb on + strandat 39.826 kb on - strandat 39.865 kb on + strandat 39.865 kb on + strandat 39.866 kb on - strandat 39.874 kb on - strandat 39.886 kb on + strandat 39.894 kb on - strandat 39.926 kb on + strandat 39.926 kb on + strandat 40.133 kb on + strand, within EX28DRAFT_3834at 40.133 kb on + strand, within EX28DRAFT_3834at 40.133 kb on + strand, within EX28DRAFT_3834at 40.133 kb on + strand, within EX28DRAFT_3834at 40.134 kb on - strand, within EX28DRAFT_3834at 40.135 kb on + strand, within EX28DRAFT_3834at 40.136 kb on - strand, within EX28DRAFT_3834at 40.183 kb on - strand, within EX28DRAFT_3834at 40.402 kb on + strand, within EX28DRAFT_3834at 40.455 kb on + strand, within EX28DRAFT_3834at 40.455 kb on + strand, within EX28DRAFT_3834at 40.718 kb on + strand, within EX28DRAFT_3834at 40.720 kb on + strand, within EX28DRAFT_3834at 40.747 kb on + strand, within EX28DRAFT_3834at 40.747 kb on + strand, within EX28DRAFT_3834at 40.940 kb on + strandat 40.940 kb on + strandat 40.941 kb on - strandat 41.062 kb on - strandat 41.062 kb on - strandat 41.062 kb on - strandat 41.062 kb on - strandat 41.062 kb on - strandat 41.065 kb on + strandat 41.066 kb on - strandat 41.066 kb on - strandat 41.098 kb on - strandat 41.098 kb on - strandat 41.098 kb on - strandat 41.112 kb on + strandat 41.113 kb on - strandat 41.113 kb on - strandat 41.113 kb on - strandat 41.113 kb on - strandat 41.119 kb on + strandat 41.120 kb on - strandat 41.121 kb on + strandat 41.121 kb on + strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.122 kb on - strandat 41.167 kb on + strand, within EX28DRAFT_3835at 41.253 kb on - strand, within EX28DRAFT_3835at 41.324 kb on - strand, within EX28DRAFT_3835at 41.324 kb on - strand, within EX28DRAFT_3835at 41.326 kb on + strand, within EX28DRAFT_3835at 41.326 kb on + strand, within EX28DRAFT_3835at 41.327 kb on - strand, within EX28DRAFT_3835at 41.327 kb on - strand, within EX28DRAFT_3835at 41.371 kb on + strand, within EX28DRAFT_3835at 41.384 kb on - strand, within EX28DRAFT_3835at 41.508 kb on + strand, within EX28DRAFT_3835at 41.521 kb on + strand, within EX28DRAFT_3835at 41.566 kb on - strand, within EX28DRAFT_3835at 41.625 kb on + strand, within EX28DRAFT_3835at 41.724 kb on + strand, within EX28DRAFT_3835at 41.725 kb on - strand, within EX28DRAFT_3835at 41.746 kb on + strand, within EX28DRAFT_3835at 41.749 kb on + strand, within EX28DRAFT_3835at 41.749 kb on + strand, within EX28DRAFT_3835at 41.749 kb on + strand, within EX28DRAFT_3835at 41.750 kb on - strand, within EX28DRAFT_3835at 41.750 kb on - strand, within EX28DRAFT_3835at 41.766 kb on - strand, within EX28DRAFT_3835at 41.780 kb on - strand, within EX28DRAFT_3835at 41.789 kb on - strand, within EX28DRAFT_3835at 41.837 kb on + strandat 41.885 kb on + strandat 41.886 kb on - strandat 41.905 kb on - strandat 41.969 kb on - strandat 41.985 kb on + strandat 41.987 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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39,164 - EX28DRAFT_3833 0.45 +0.6
39,164 - EX28DRAFT_3833 0.45 -1.2
39,175 + EX28DRAFT_3833 0.46 -0.4
39,330 + EX28DRAFT_3833 0.59 +0.5
39,379 - EX28DRAFT_3833 0.64 +1.2
39,397 + EX28DRAFT_3833 0.65 +0.1
39,427 + EX28DRAFT_3833 0.68 +0.6
39,431 + EX28DRAFT_3833 0.68 -1.0
39,431 + EX28DRAFT_3833 0.68 +1.0
39,431 + EX28DRAFT_3833 0.68 -0.9
39,682 + EX28DRAFT_3833 0.89 -0.0
39,682 + EX28DRAFT_3833 0.89 +0.0
39,682 + EX28DRAFT_3833 0.89 +0.1
39,682 + EX28DRAFT_3833 0.89 -0.9
39,682 + EX28DRAFT_3833 0.89 +0.6
39,682 + EX28DRAFT_3833 0.89 -0.4
39,683 - EX28DRAFT_3833 0.89 -1.0
39,683 - EX28DRAFT_3833 0.89 +0.6
39,683 - EX28DRAFT_3833 0.89 -0.3
39,712 + +0.4
39,712 + +1.2
39,713 - -0.0
39,740 + +0.2
39,740 + +0.0
39,766 - +0.2
39,816 - -0.1
39,816 - -0.3
39,825 + -1.0
39,826 - +0.2
39,865 + +0.9
39,865 + -0.1
39,866 - +0.3
39,874 - +0.2
39,886 + +0.4
39,894 - -0.3
39,926 + +1.0
39,926 + -3.0
40,133 + EX28DRAFT_3834 0.25 -0.3
40,133 + EX28DRAFT_3834 0.25 +0.2
40,133 + EX28DRAFT_3834 0.25 +0.8
40,133 + EX28DRAFT_3834 0.25 -1.3
40,134 - EX28DRAFT_3834 0.25 +1.1
40,135 + EX28DRAFT_3834 0.25 +2.9
40,136 - EX28DRAFT_3834 0.25 -0.2
40,183 - EX28DRAFT_3834 0.29 +0.2
40,402 + EX28DRAFT_3834 0.47 -0.0
40,455 + EX28DRAFT_3834 0.52 +0.0
40,455 + EX28DRAFT_3834 0.52 +1.9
40,718 + EX28DRAFT_3834 0.74 +1.1
40,720 + EX28DRAFT_3834 0.74 -0.6
40,747 + EX28DRAFT_3834 0.77 -0.4
40,747 + EX28DRAFT_3834 0.77 -0.3
40,940 + -0.0
40,940 + +0.3
40,941 - -0.1
41,062 - +0.0
41,062 - +0.0
41,062 - -0.3
41,062 - +0.3
41,062 - +0.6
41,065 + +0.2
41,066 - +0.7
41,066 - -0.3
41,098 - +1.5
41,098 - +0.6
41,098 - +0.0
41,112 + +0.1
41,113 - +0.9
41,113 - +1.0
41,113 - +0.6
41,113 - -1.1
41,119 + +2.4
41,120 - +0.2
41,121 + +0.5
41,121 + -0.1
41,122 - +0.4
41,122 - +0.1
41,122 - +0.2
41,122 - +0.5
41,122 - +0.1
41,122 - -0.4
41,167 + EX28DRAFT_3835 0.13 +0.1
41,253 - EX28DRAFT_3835 0.23 +0.5
41,324 - EX28DRAFT_3835 0.32 +0.7
41,324 - EX28DRAFT_3835 0.32 +0.2
41,326 + EX28DRAFT_3835 0.32 -1.4
41,326 + EX28DRAFT_3835 0.32 -0.8
41,327 - EX28DRAFT_3835 0.32 +0.2
41,327 - EX28DRAFT_3835 0.32 +0.4
41,371 + EX28DRAFT_3835 0.38 +1.6
41,384 - EX28DRAFT_3835 0.39 +0.3
41,508 + EX28DRAFT_3835 0.54 -0.2
41,521 + EX28DRAFT_3835 0.56 +0.2
41,566 - EX28DRAFT_3835 0.61 +0.4
41,625 + EX28DRAFT_3835 0.68 +0.0
41,724 + EX28DRAFT_3835 0.80 -0.7
41,725 - EX28DRAFT_3835 0.81 +0.4
41,746 + EX28DRAFT_3835 0.83 -0.0
41,749 + EX28DRAFT_3835 0.84 -0.4
41,749 + EX28DRAFT_3835 0.84 +0.2
41,749 + EX28DRAFT_3835 0.84 +0.5
41,750 - EX28DRAFT_3835 0.84 +0.5
41,750 - EX28DRAFT_3835 0.84 +0.4
41,766 - EX28DRAFT_3835 0.86 -0.0
41,780 - EX28DRAFT_3835 0.87 +0.1
41,789 - EX28DRAFT_3835 0.88 -0.1
41,837 + -0.4
41,885 + +1.5
41,886 - +0.3
41,905 - +2.1
41,969 - -0.2
41,985 + -0.0
41,987 + -0.2

Or see this region's nucleotide sequence