Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3827

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3826 and EX28DRAFT_3827 overlap by 8 nucleotidesEX28DRAFT_3827 and EX28DRAFT_3828 overlap by 1 nucleotidesEX28DRAFT_3828 and EX28DRAFT_3829 are separated by 103 nucleotides EX28DRAFT_3826: EX28DRAFT_3826 - Uncharacterized protein conserved in bacteria, at 30,271 to 31,266 _3826 EX28DRAFT_3827: EX28DRAFT_3827 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 31,259 to 32,179 _3827 EX28DRAFT_3828: EX28DRAFT_3828 - Amidases related to nicotinamidase, at 32,179 to 32,718 _3828 EX28DRAFT_3829: EX28DRAFT_3829 - D-xylulose kinase, at 32,822 to 34,276 _3829 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 30.311 kb on + strandat 30.438 kb on - strand, within EX28DRAFT_3826at 30.478 kb on - strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.547 kb on + strand, within EX28DRAFT_3826at 30.548 kb on - strand, within EX28DRAFT_3826at 30.548 kb on - strand, within EX28DRAFT_3826at 30.548 kb on - strand, within EX28DRAFT_3826at 30.550 kb on - strand, within EX28DRAFT_3826at 30.550 kb on - strand, within EX28DRAFT_3826at 30.592 kb on + strand, within EX28DRAFT_3826at 30.592 kb on + strand, within EX28DRAFT_3826at 30.593 kb on - strand, within EX28DRAFT_3826at 30.593 kb on - strand, within EX28DRAFT_3826at 30.648 kb on + strand, within EX28DRAFT_3826at 30.649 kb on - strand, within EX28DRAFT_3826at 30.652 kb on + strand, within EX28DRAFT_3826at 30.653 kb on - strand, within EX28DRAFT_3826at 30.653 kb on - strand, within EX28DRAFT_3826at 30.653 kb on - strand, within EX28DRAFT_3826at 30.793 kb on + strand, within EX28DRAFT_3826at 30.793 kb on + strand, within EX28DRAFT_3826at 30.794 kb on - strand, within EX28DRAFT_3826at 30.794 kb on - strand, within EX28DRAFT_3826at 30.814 kb on + strand, within EX28DRAFT_3826at 30.815 kb on - strand, within EX28DRAFT_3826at 30.817 kb on + strand, within EX28DRAFT_3826at 30.979 kb on + strand, within EX28DRAFT_3826at 30.985 kb on + strand, within EX28DRAFT_3826at 31.005 kb on + strand, within EX28DRAFT_3826at 31.006 kb on - strand, within EX28DRAFT_3826at 31.077 kb on + strand, within EX28DRAFT_3826at 31.078 kb on - strand, within EX28DRAFT_3826at 31.264 kb on + strandat 31.268 kb on - strandat 31.290 kb on + strandat 31.349 kb on + strandat 31.350 kb on - strandat 31.350 kb on - strandat 31.572 kb on - strand, within EX28DRAFT_3827at 31.772 kb on + strand, within EX28DRAFT_3827at 31.780 kb on + strand, within EX28DRAFT_3827at 31.781 kb on - strand, within EX28DRAFT_3827at 31.784 kb on - strand, within EX28DRAFT_3827at 31.784 kb on - strand, within EX28DRAFT_3827at 32.039 kb on + strand, within EX28DRAFT_3827at 32.040 kb on - strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.073 kb on + strand, within EX28DRAFT_3827at 32.074 kb on - strand, within EX28DRAFT_3827at 32.133 kb on - strandat 32.133 kb on - strandat 32.277 kb on + strand, within EX28DRAFT_3828at 32.288 kb on + strand, within EX28DRAFT_3828at 32.289 kb on - strand, within EX28DRAFT_3828at 32.401 kb on - strand, within EX28DRAFT_3828at 32.464 kb on - strand, within EX28DRAFT_3828at 32.525 kb on + strand, within EX28DRAFT_3828at 32.525 kb on + strand, within EX28DRAFT_3828at 32.751 kb on + strandat 32.819 kb on + strandat 32.909 kb on + strandat 32.909 kb on + strandat 32.976 kb on - strand, within EX28DRAFT_3829

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
30,311 + +2.0
30,438 - EX28DRAFT_3826 0.17 +0.5
30,478 - EX28DRAFT_3826 0.21 -0.2
30,547 + EX28DRAFT_3826 0.28 -0.5
30,547 + EX28DRAFT_3826 0.28 -0.0
30,547 + EX28DRAFT_3826 0.28 +0.1
30,547 + EX28DRAFT_3826 0.28 -1.2
30,547 + EX28DRAFT_3826 0.28 -0.8
30,547 + EX28DRAFT_3826 0.28 -0.6
30,548 - EX28DRAFT_3826 0.28 -0.0
30,548 - EX28DRAFT_3826 0.28 -0.6
30,548 - EX28DRAFT_3826 0.28 -0.4
30,550 - EX28DRAFT_3826 0.28 +0.2
30,550 - EX28DRAFT_3826 0.28 +0.2
30,592 + EX28DRAFT_3826 0.32 +0.4
30,592 + EX28DRAFT_3826 0.32 -0.0
30,593 - EX28DRAFT_3826 0.32 +0.3
30,593 - EX28DRAFT_3826 0.32 +0.3
30,648 + EX28DRAFT_3826 0.38 -0.3
30,649 - EX28DRAFT_3826 0.38 -0.4
30,652 + EX28DRAFT_3826 0.38 -0.6
30,653 - EX28DRAFT_3826 0.38 +1.1
30,653 - EX28DRAFT_3826 0.38 -1.0
30,653 - EX28DRAFT_3826 0.38 -0.1
30,793 + EX28DRAFT_3826 0.52 +0.1
30,793 + EX28DRAFT_3826 0.52 -0.9
30,794 - EX28DRAFT_3826 0.53 -0.9
30,794 - EX28DRAFT_3826 0.53 +0.3
30,814 + EX28DRAFT_3826 0.55 -0.2
30,815 - EX28DRAFT_3826 0.55 -0.3
30,817 + EX28DRAFT_3826 0.55 -0.1
30,979 + EX28DRAFT_3826 0.71 -0.0
30,985 + EX28DRAFT_3826 0.72 +1.4
31,005 + EX28DRAFT_3826 0.74 +0.9
31,006 - EX28DRAFT_3826 0.74 -0.3
31,077 + EX28DRAFT_3826 0.81 -1.2
31,078 - EX28DRAFT_3826 0.81 -0.0
31,264 + +0.2
31,268 - -0.1
31,290 + -1.1
31,349 + +0.3
31,350 - -0.1
31,350 - +1.0
31,572 - EX28DRAFT_3827 0.34 -0.6
31,772 + EX28DRAFT_3827 0.56 +1.6
31,780 + EX28DRAFT_3827 0.57 -1.0
31,781 - EX28DRAFT_3827 0.57 -0.1
31,784 - EX28DRAFT_3827 0.57 -0.5
31,784 - EX28DRAFT_3827 0.57 -0.6
32,039 + EX28DRAFT_3827 0.85 +0.0
32,040 - EX28DRAFT_3827 0.85 -0.6
32,073 + EX28DRAFT_3827 0.88 -0.3
32,073 + EX28DRAFT_3827 0.88 +0.1
32,073 + EX28DRAFT_3827 0.88 -0.6
32,073 + EX28DRAFT_3827 0.88 -2.1
32,073 + EX28DRAFT_3827 0.88 +0.2
32,074 - EX28DRAFT_3827 0.88 -0.4
32,133 - +1.1
32,133 - +0.3
32,277 + EX28DRAFT_3828 0.18 -0.5
32,288 + EX28DRAFT_3828 0.20 -0.3
32,289 - EX28DRAFT_3828 0.20 +0.0
32,401 - EX28DRAFT_3828 0.41 -0.1
32,464 - EX28DRAFT_3828 0.53 -0.3
32,525 + EX28DRAFT_3828 0.64 +0.1
32,525 + EX28DRAFT_3828 0.64 +0.5
32,751 + -0.6
32,819 + -0.2
32,909 + +0.0
32,909 + +0.2
32,976 - EX28DRAFT_3829 0.11 -0.0

Or see this region's nucleotide sequence