Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3815 and EX28DRAFT_3816 are separated by 128 nucleotides EX28DRAFT_3816 and EX28DRAFT_3817 are separated by 26 nucleotides
EX28DRAFT_3815: EX28DRAFT_3815 - Sugar kinases, ribokinase family, at 19,521 to 20,459
_3815
EX28DRAFT_3816: EX28DRAFT_3816 - Sugar phosphate permease, at 20,588 to 21,868
_3816
EX28DRAFT_3817: EX28DRAFT_3817 - Lactate dehydrogenase and related dehydrogenases, at 21,895 to 22,869
_3817
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.613 kb on + strand at 19.749 kb on - strand, within EX28DRAFT_3815 at 19.802 kb on + strand, within EX28DRAFT_3815 at 19.802 kb on + strand, within EX28DRAFT_3815 at 19.802 kb on + strand, within EX28DRAFT_3815 at 19.962 kb on + strand, within EX28DRAFT_3815 at 19.963 kb on - strand, within EX28DRAFT_3815 at 20.175 kb on + strand, within EX28DRAFT_3815 at 20.191 kb on + strand, within EX28DRAFT_3815 at 20.200 kb on + strand, within EX28DRAFT_3815 at 20.475 kb on + strand at 20.509 kb on + strand at 20.510 kb on - strand at 20.610 kb on + strand at 20.651 kb on + strand at 20.651 kb on + strand at 20.802 kb on - strand, within EX28DRAFT_3816 at 20.820 kb on + strand, within EX28DRAFT_3816 at 20.825 kb on - strand, within EX28DRAFT_3816 at 20.825 kb on - strand, within EX28DRAFT_3816 at 20.825 kb on - strand, within EX28DRAFT_3816 at 20.891 kb on - strand, within EX28DRAFT_3816 at 20.891 kb on - strand, within EX28DRAFT_3816 at 20.963 kb on + strand, within EX28DRAFT_3816 at 20.963 kb on + strand, within EX28DRAFT_3816 at 20.964 kb on - strand, within EX28DRAFT_3816 at 20.964 kb on - strand, within EX28DRAFT_3816 at 20.981 kb on - strand, within EX28DRAFT_3816 at 21.007 kb on + strand, within EX28DRAFT_3816 at 21.258 kb on - strand, within EX28DRAFT_3816 at 21.306 kb on - strand, within EX28DRAFT_3816 at 21.306 kb on - strand, within EX28DRAFT_3816 at 21.310 kb on + strand, within EX28DRAFT_3816 at 21.390 kb on + strand, within EX28DRAFT_3816 at 21.420 kb on - strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.569 kb on + strand, within EX28DRAFT_3816 at 21.570 kb on - strand, within EX28DRAFT_3816 at 21.571 kb on + strand, within EX28DRAFT_3816 at 21.571 kb on + strand, within EX28DRAFT_3816 at 21.572 kb on - strand, within EX28DRAFT_3816 at 21.572 kb on - strand, within EX28DRAFT_3816 at 21.572 kb on - strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.602 kb on + strand, within EX28DRAFT_3816 at 21.603 kb on - strand, within EX28DRAFT_3816 at 21.603 kb on - strand, within EX28DRAFT_3816 at 21.688 kb on + strand, within EX28DRAFT_3816 at 21.767 kb on + strand at 21.767 kb on + strand at 21.767 kb on + strand at 21.767 kb on + strand at 21.916 kb on + strand at 22.101 kb on + strand, within EX28DRAFT_3817 at 22.124 kb on - strand, within EX28DRAFT_3817 at 22.176 kb on + strand, within EX28DRAFT_3817 at 22.176 kb on + strand, within EX28DRAFT_3817 at 22.226 kb on + strand, within EX28DRAFT_3817 at 22.398 kb on + strand, within EX28DRAFT_3817 at 22.838 kb on + strand at 22.839 kb on - strand at 22.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 19,613 + +0.8 19,749 - EX28DRAFT_3815 0.24 +0.2 19,802 + EX28DRAFT_3815 0.30 -3.4 19,802 + EX28DRAFT_3815 0.30 +0.7 19,802 + EX28DRAFT_3815 0.30 -0.3 19,962 + EX28DRAFT_3815 0.47 +0.2 19,963 - EX28DRAFT_3815 0.47 +1.8 20,175 + EX28DRAFT_3815 0.70 -1.3 20,191 + EX28DRAFT_3815 0.71 -0.1 20,200 + EX28DRAFT_3815 0.72 +0.4 20,475 + -0.2 20,509 + -1.4 20,510 - -0.6 20,610 + +0.2 20,651 + -2.4 20,651 + -0.2 20,802 - EX28DRAFT_3816 0.17 +0.8 20,820 + EX28DRAFT_3816 0.18 +0.3 20,825 - EX28DRAFT_3816 0.19 -0.3 20,825 - EX28DRAFT_3816 0.19 -0.2 20,825 - EX28DRAFT_3816 0.19 +0.8 20,891 - EX28DRAFT_3816 0.24 -0.0 20,891 - EX28DRAFT_3816 0.24 +0.1 20,963 + EX28DRAFT_3816 0.29 -0.4 20,963 + EX28DRAFT_3816 0.29 -0.6 20,964 - EX28DRAFT_3816 0.29 +0.7 20,964 - EX28DRAFT_3816 0.29 +0.2 20,981 - EX28DRAFT_3816 0.31 +0.4 21,007 + EX28DRAFT_3816 0.33 -0.1 21,258 - EX28DRAFT_3816 0.52 +0.1 21,306 - EX28DRAFT_3816 0.56 +0.3 21,306 - EX28DRAFT_3816 0.56 -0.6 21,310 + EX28DRAFT_3816 0.56 -0.4 21,390 + EX28DRAFT_3816 0.63 +1.4 21,420 - EX28DRAFT_3816 0.65 -3.4 21,569 + EX28DRAFT_3816 0.77 -0.2 21,569 + EX28DRAFT_3816 0.77 +0.2 21,569 + EX28DRAFT_3816 0.77 +0.3 21,569 + EX28DRAFT_3816 0.77 +1.8 21,570 - EX28DRAFT_3816 0.77 -0.4 21,571 + EX28DRAFT_3816 0.77 +0.4 21,571 + EX28DRAFT_3816 0.77 -0.2 21,572 - EX28DRAFT_3816 0.77 -1.6 21,572 - EX28DRAFT_3816 0.77 +2.0 21,572 - EX28DRAFT_3816 0.77 -0.6 21,602 + EX28DRAFT_3816 0.79 +0.3 21,602 + EX28DRAFT_3816 0.79 +0.1 21,602 + EX28DRAFT_3816 0.79 +1.7 21,602 + EX28DRAFT_3816 0.79 -2.7 21,602 + EX28DRAFT_3816 0.79 +0.0 21,602 + EX28DRAFT_3816 0.79 +0.7 21,602 + EX28DRAFT_3816 0.79 -0.7 21,603 - EX28DRAFT_3816 0.79 +0.4 21,603 - EX28DRAFT_3816 0.79 -0.2 21,688 + EX28DRAFT_3816 0.86 -0.3 21,767 + -0.2 21,767 + -0.6 21,767 + +0.1 21,767 + +0.3 21,916 + +0.3 22,101 + EX28DRAFT_3817 0.21 +0.1 22,124 - EX28DRAFT_3817 0.23 +0.1 22,176 + EX28DRAFT_3817 0.29 -0.3 22,176 + EX28DRAFT_3817 0.29 +0.0 22,226 + EX28DRAFT_3817 0.34 +0.2 22,398 + EX28DRAFT_3817 0.52 -0.3 22,838 + +0.1 22,839 - -0.6 22,868 - -1.0
Or see this region's nucleotide sequence