Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3740 and EX28DRAFT_3741 overlap by 1 nucleotides EX28DRAFT_3741 and EX28DRAFT_3742 overlap by 4 nucleotides EX28DRAFT_3742 and EX28DRAFT_3743 are separated by 93 nucleotides
EX28DRAFT_3740: EX28DRAFT_3740 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 418,570 to 419,367
_3740
EX28DRAFT_3741: EX28DRAFT_3741 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 419,367 to 420,257
_3741
EX28DRAFT_3742: EX28DRAFT_3742 - ABC-type Fe3+-siderophore transport system, permease component, at 420,254 to 422,236
_3742
EX28DRAFT_3743: EX28DRAFT_3743 - glutamate-1-semialdehyde-2,1-aminomutase, at 422,330 to 423,610
_3743
Position (kb) 420
421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2 at 419.298 kb on + strand at 419.298 kb on + strand at 419.299 kb on - strand at 419.299 kb on - strand at 419.299 kb on - strand at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.561 kb on + strand, within EX28DRAFT_3741 at 419.562 kb on - strand, within EX28DRAFT_3741 at 419.562 kb on - strand, within EX28DRAFT_3741 at 420.190 kb on - strand at 420.248 kb on + strand at 420.248 kb on + strand at 420.249 kb on - strand at 420.249 kb on - strand at 420.259 kb on + strand at 420.291 kb on + strand at 420.318 kb on + strand at 420.319 kb on - strand at 420.398 kb on - strand at 420.501 kb on + strand, within EX28DRAFT_3742 at 420.505 kb on + strand, within EX28DRAFT_3742 at 420.565 kb on + strand, within EX28DRAFT_3742 at 420.565 kb on + strand, within EX28DRAFT_3742 at 420.565 kb on + strand, within EX28DRAFT_3742 at 420.566 kb on - strand, within EX28DRAFT_3742 at 420.734 kb on - strand, within EX28DRAFT_3742 at 420.826 kb on - strand, within EX28DRAFT_3742 at 420.978 kb on + strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 421.303 kb on + strand, within EX28DRAFT_3742 at 421.723 kb on + strand, within EX28DRAFT_3742 at 421.802 kb on + strand, within EX28DRAFT_3742 at 422.206 kb on + strand at 422.207 kb on - strand at 422.207 kb on - strand at 422.210 kb on + strand at 422.210 kb on + strand at 422.237 kb on + strand at 422.257 kb on + strand at 422.331 kb on + strand at 422.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 419,298 + +0.6 419,298 + +0.5 419,299 - +1.3 419,299 - +2.3 419,299 - +0.4 419,560 - EX28DRAFT_3741 0.22 -0.6 419,560 - EX28DRAFT_3741 0.22 -0.1 419,560 - EX28DRAFT_3741 0.22 +0.5 419,561 + EX28DRAFT_3741 0.22 -0.5 419,562 - EX28DRAFT_3741 0.22 -0.4 419,562 - EX28DRAFT_3741 0.22 +0.4 420,190 - +0.9 420,248 + -1.5 420,248 + +0.6 420,249 - +0.1 420,249 - +0.0 420,259 + +0.4 420,291 + +0.6 420,318 + -0.5 420,319 - -0.3 420,398 - -0.1 420,501 + EX28DRAFT_3742 0.12 -0.8 420,505 + EX28DRAFT_3742 0.13 +1.6 420,565 + EX28DRAFT_3742 0.16 -0.4 420,565 + EX28DRAFT_3742 0.16 -0.1 420,565 + EX28DRAFT_3742 0.16 +0.3 420,566 - EX28DRAFT_3742 0.16 -0.2 420,734 - EX28DRAFT_3742 0.24 -0.2 420,826 - EX28DRAFT_3742 0.29 -0.3 420,978 + EX28DRAFT_3742 0.37 +0.4 420,979 - EX28DRAFT_3742 0.37 +0.0 420,979 - EX28DRAFT_3742 0.37 +1.0 420,979 - EX28DRAFT_3742 0.37 +2.3 420,979 - EX28DRAFT_3742 0.37 +1.6 421,303 + EX28DRAFT_3742 0.53 -0.4 421,723 + EX28DRAFT_3742 0.74 -0.4 421,802 + EX28DRAFT_3742 0.78 +0.1 422,206 + -0.2 422,207 - -2.3 422,207 - -1.7 422,210 + -2.1 422,210 + +0.4 422,237 + +0.8 422,257 + -1.9 422,331 + -1.6 422,332 - -1.3
Or see this region's nucleotide sequence