Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3643 and EX28DRAFT_3644 are separated by 4 nucleotides EX28DRAFT_3644 and EX28DRAFT_3645 are separated by 3 nucleotides EX28DRAFT_3645 and EX28DRAFT_3646 overlap by 4 nucleotides EX28DRAFT_3646 and EX28DRAFT_3647 overlap by 1 nucleotides
EX28DRAFT_3643: EX28DRAFT_3643 - Bis(5'nucleosyl)-tetraphosphatase, ApaH, at 305,326 to 306,174
_3643
EX28DRAFT_3644: EX28DRAFT_3644 - Uncharacterized protein affecting Mg2+/Co2+ transport, at 306,179 to 306,556
_3644
EX28DRAFT_3645: EX28DRAFT_3645 - ribosomal RNA small subunit methyltransferase A, at 306,560 to 307,381
_3645
EX28DRAFT_3646: EX28DRAFT_3646 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 307,378 to 308,364
_3646
EX28DRAFT_3647: EX28DRAFT_3647 - periplasmic chaperone for outer membrane proteins SurA, at 308,364 to 309,650
_3647
Position (kb) 306
307
308 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 305.600 kb on - strand, within EX28DRAFT_3643 at 305.877 kb on + strand, within EX28DRAFT_3643 at 306.028 kb on + strand, within EX28DRAFT_3643 at 306.165 kb on - strand at 306.165 kb on - strand at 306.168 kb on + strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.169 kb on - strand at 306.313 kb on - strand, within EX28DRAFT_3644 at 306.313 kb on - strand, within EX28DRAFT_3644 at 306.318 kb on + strand, within EX28DRAFT_3644 at 306.465 kb on + strand, within EX28DRAFT_3644 at 306.514 kb on - strand, within EX28DRAFT_3644 at 306.524 kb on + strand at 306.525 kb on - strand at 306.537 kb on - strand at 306.561 kb on + strand at 306.886 kb on - strand, within EX28DRAFT_3645 at 306.886 kb on - strand, within EX28DRAFT_3645 at 306.995 kb on - strand, within EX28DRAFT_3645 at 306.997 kb on - strand, within EX28DRAFT_3645 at 307.389 kb on + strand at 307.423 kb on - strand at 307.423 kb on - strand at 307.575 kb on - strand, within EX28DRAFT_3646 at 307.575 kb on - strand, within EX28DRAFT_3646 at 308.081 kb on + strand, within EX28DRAFT_3646 at 308.081 kb on + strand, within EX28DRAFT_3646 at 308.081 kb on + strand, within EX28DRAFT_3646 at 308.082 kb on - strand, within EX28DRAFT_3646 at 308.207 kb on - strand, within EX28DRAFT_3646
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 305,600 - EX28DRAFT_3643 0.32 -1.7 305,877 + EX28DRAFT_3643 0.65 -0.6 306,028 + EX28DRAFT_3643 0.83 -0.7 306,165 - -0.2 306,165 - -1.5 306,168 + +1.3 306,169 - -2.4 306,169 - -1.7 306,169 - -1.5 306,169 - -0.8 306,169 - -2.2 306,169 - -1.5 306,313 - EX28DRAFT_3644 0.35 +0.3 306,313 - EX28DRAFT_3644 0.35 -0.2 306,318 + EX28DRAFT_3644 0.37 -2.0 306,465 + EX28DRAFT_3644 0.76 -2.1 306,514 - EX28DRAFT_3644 0.89 -0.3 306,524 + -1.4 306,525 - -0.0 306,537 - +0.0 306,561 + -0.0 306,886 - EX28DRAFT_3645 0.40 -2.9 306,886 - EX28DRAFT_3645 0.40 -3.7 306,995 - EX28DRAFT_3645 0.53 -1.7 306,997 - EX28DRAFT_3645 0.53 -3.8 307,389 + -1.8 307,423 - +2.0 307,423 - +0.1 307,575 - EX28DRAFT_3646 0.20 -0.5 307,575 - EX28DRAFT_3646 0.20 +0.3 308,081 + EX28DRAFT_3646 0.71 -0.5 308,081 + EX28DRAFT_3646 0.71 -0.7 308,081 + EX28DRAFT_3646 0.71 -2.1 308,082 - EX28DRAFT_3646 0.71 +0.9 308,207 - EX28DRAFT_3646 0.84 -1.3
Or see this region's nucleotide sequence