Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3638 and EX28DRAFT_3639 are separated by 138 nucleotides EX28DRAFT_3639 and EX28DRAFT_3640 are separated by 103 nucleotides EX28DRAFT_3640 and EX28DRAFT_3641 overlap by 8 nucleotides
EX28DRAFT_3638: EX28DRAFT_3638 - carbamoyl-phosphate synthase, large subunit, at 298,604 to 301,828
_3638
EX28DRAFT_3639: EX28DRAFT_3639 - Bacterial protein of unknown function (DUF903), at 301,967 to 302,200
_3639
EX28DRAFT_3640: EX28DRAFT_3640 - Putative NADPH-quinone reductase (modulator of drug activity B), at 302,304 to 302,834
_3640
EX28DRAFT_3641: EX28DRAFT_3641 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 302,827 to 304,692
_3641
Position (kb) 301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 301.637 kb on + strand at 302.097 kb on + strand, within EX28DRAFT_3639 at 302.097 kb on + strand, within EX28DRAFT_3639 at 302.124 kb on - strand, within EX28DRAFT_3639 at 302.126 kb on - strand, within EX28DRAFT_3639 at 302.194 kb on + strand at 302.198 kb on + strand at 302.198 kb on + strand at 302.198 kb on + strand at 302.199 kb on - strand at 302.199 kb on - strand at 302.216 kb on + strand at 302.216 kb on + strand at 302.231 kb on + strand at 302.232 kb on - strand at 302.232 kb on - strand at 302.238 kb on + strand at 302.239 kb on - strand at 302.239 kb on - strand at 302.254 kb on + strand at 302.254 kb on + strand at 302.262 kb on - strand at 302.262 kb on - strand at 302.287 kb on + strand at 302.319 kb on + strand at 302.375 kb on - strand, within EX28DRAFT_3640 at 302.375 kb on - strand, within EX28DRAFT_3640 at 302.392 kb on + strand, within EX28DRAFT_3640 at 302.392 kb on + strand, within EX28DRAFT_3640 at 302.398 kb on + strand, within EX28DRAFT_3640 at 302.398 kb on + strand, within EX28DRAFT_3640 at 302.398 kb on + strand, within EX28DRAFT_3640 at 302.399 kb on - strand, within EX28DRAFT_3640 at 302.399 kb on - strand, within EX28DRAFT_3640 at 302.399 kb on - strand, within EX28DRAFT_3640 at 302.410 kb on - strand, within EX28DRAFT_3640 at 302.419 kb on - strand, within EX28DRAFT_3640 at 302.429 kb on + strand, within EX28DRAFT_3640 at 302.433 kb on - strand, within EX28DRAFT_3640 at 302.481 kb on - strand, within EX28DRAFT_3640 at 302.505 kb on + strand, within EX28DRAFT_3640 at 302.505 kb on + strand, within EX28DRAFT_3640 at 302.540 kb on + strand, within EX28DRAFT_3640 at 302.566 kb on - strand, within EX28DRAFT_3640 at 302.566 kb on - strand, within EX28DRAFT_3640 at 302.791 kb on - strand at 302.792 kb on + strand at 302.792 kb on + strand at 302.793 kb on - strand at 302.793 kb on - strand at 302.838 kb on + strand at 302.860 kb on + strand at 303.178 kb on - strand, within EX28DRAFT_3641
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 301,637 + -2.3 302,097 + EX28DRAFT_3639 0.56 -0.5 302,097 + EX28DRAFT_3639 0.56 +0.2 302,124 - EX28DRAFT_3639 0.67 -1.3 302,126 - EX28DRAFT_3639 0.68 +2.3 302,194 + -2.0 302,198 + +0.2 302,198 + +0.2 302,198 + +1.5 302,199 - -0.4 302,199 - -0.4 302,216 + -0.8 302,216 + +0.2 302,231 + -0.3 302,232 - -1.2 302,232 - +0.3 302,238 + +0.6 302,239 - -0.3 302,239 - -0.2 302,254 + +0.3 302,254 + +0.0 302,262 - -0.0 302,262 - +0.3 302,287 + -0.0 302,319 + +0.3 302,375 - EX28DRAFT_3640 0.13 +1.1 302,375 - EX28DRAFT_3640 0.13 +0.0 302,392 + EX28DRAFT_3640 0.17 -1.1 302,392 + EX28DRAFT_3640 0.17 -0.0 302,398 + EX28DRAFT_3640 0.18 +0.5 302,398 + EX28DRAFT_3640 0.18 -3.7 302,398 + EX28DRAFT_3640 0.18 +0.0 302,399 - EX28DRAFT_3640 0.18 -1.6 302,399 - EX28DRAFT_3640 0.18 -0.0 302,399 - EX28DRAFT_3640 0.18 -2.6 302,410 - EX28DRAFT_3640 0.20 -0.1 302,419 - EX28DRAFT_3640 0.22 -0.3 302,429 + EX28DRAFT_3640 0.24 +0.0 302,433 - EX28DRAFT_3640 0.24 -0.3 302,481 - EX28DRAFT_3640 0.33 +0.5 302,505 + EX28DRAFT_3640 0.38 -0.3 302,505 + EX28DRAFT_3640 0.38 -0.2 302,540 + EX28DRAFT_3640 0.44 -3.0 302,566 - EX28DRAFT_3640 0.49 -2.5 302,566 - EX28DRAFT_3640 0.49 +0.1 302,791 - +0.5 302,792 + +0.2 302,792 + -0.7 302,793 - -0.1 302,793 - -0.5 302,838 + +0.8 302,860 + +0.2 303,178 - EX28DRAFT_3641 0.19 -0.1
Or see this region's nucleotide sequence