Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3622 and EX28DRAFT_3623 overlap by 24 nucleotides EX28DRAFT_3623 and EX28DRAFT_3624 are separated by 26 nucleotides EX28DRAFT_3624 and EX28DRAFT_3625 are separated by 117 nucleotides
EX28DRAFT_3622: EX28DRAFT_3622 - Arabinose efflux permease, at 281,950 to 283,272
_3622
EX28DRAFT_3623: EX28DRAFT_3623 - Predicted membrane protein, at 283,249 to 283,815
_3623
EX28DRAFT_3624: EX28DRAFT_3624 - hypothetical protein, at 283,842 to 283,994
_3624
EX28DRAFT_3625: EX28DRAFT_3625 - chaperone protein DnaK, at 284,112 to 286,025
_3625
Position (kb) 283
284 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 282.923 kb on - strand, within EX28DRAFT_3622 at 282.964 kb on + strand, within EX28DRAFT_3622 at 283.040 kb on + strand, within EX28DRAFT_3622 at 283.066 kb on + strand, within EX28DRAFT_3622 at 283.067 kb on - strand, within EX28DRAFT_3622 at 283.079 kb on - strand, within EX28DRAFT_3622 at 283.153 kb on + strand at 283.154 kb on - strand at 283.154 kb on - strand at 283.157 kb on + strand at 283.157 kb on + strand at 283.184 kb on + strand at 283.185 kb on - strand at 283.319 kb on + strand, within EX28DRAFT_3623 at 283.324 kb on - strand, within EX28DRAFT_3623 at 283.642 kb on - strand, within EX28DRAFT_3623 at 283.643 kb on + strand, within EX28DRAFT_3623 at 283.644 kb on - strand, within EX28DRAFT_3623 at 283.644 kb on - strand, within EX28DRAFT_3623 at 283.803 kb on + strand at 283.803 kb on + strand at 283.803 kb on + strand at 283.804 kb on - strand at 283.804 kb on - strand at 283.815 kb on + strand at 283.815 kb on + strand at 283.816 kb on - strand at 283.838 kb on + strand at 283.839 kb on - strand at 283.841 kb on + strand at 283.841 kb on + strand at 283.869 kb on + strand, within EX28DRAFT_3624 at 283.894 kb on + strand, within EX28DRAFT_3624 at 283.917 kb on + strand, within EX28DRAFT_3624 at 283.992 kb on + strand at 284.060 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 282,923 - EX28DRAFT_3622 0.74 -0.1 282,964 + EX28DRAFT_3622 0.77 -0.4 283,040 + EX28DRAFT_3622 0.82 -0.1 283,066 + EX28DRAFT_3622 0.84 +0.5 283,067 - EX28DRAFT_3622 0.84 +1.5 283,079 - EX28DRAFT_3622 0.85 +0.7 283,153 + +1.5 283,154 - +2.4 283,154 - -3.9 283,157 + +0.4 283,157 + +0.1 283,184 + +0.5 283,185 - +0.9 283,319 + EX28DRAFT_3623 0.12 +0.2 283,324 - EX28DRAFT_3623 0.13 +0.3 283,642 - EX28DRAFT_3623 0.69 -2.0 283,643 + EX28DRAFT_3623 0.69 -0.1 283,644 - EX28DRAFT_3623 0.70 -0.5 283,644 - EX28DRAFT_3623 0.70 +0.1 283,803 + +1.8 283,803 + -0.0 283,803 + -0.1 283,804 - +0.2 283,804 - +0.6 283,815 + -0.1 283,815 + -0.3 283,816 - -0.2 283,838 + +1.3 283,839 - +0.4 283,841 + +0.3 283,841 + -0.9 283,869 + EX28DRAFT_3624 0.18 +1.3 283,894 + EX28DRAFT_3624 0.34 +0.4 283,917 + EX28DRAFT_3624 0.49 +0.1 283,992 + +0.5 284,060 + -1.6
Or see this region's nucleotide sequence