Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3614

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3612 and EX28DRAFT_3613 are separated by 218 nucleotidesEX28DRAFT_3613 and EX28DRAFT_3614 are separated by 24 nucleotidesEX28DRAFT_3614 and EX28DRAFT_3615 are separated by 1 nucleotidesEX28DRAFT_3615 and EX28DRAFT_3616 are separated by 3 nucleotides EX28DRAFT_3612: EX28DRAFT_3612 - RNA methyltransferase, TrmH family, group 1, at 271,320 to 272,006 _3612 EX28DRAFT_3613: EX28DRAFT_3613 - RNA, at 272,225 to 272,342 _3613 EX28DRAFT_3614: EX28DRAFT_3614 - aspartate kinase (EC 2.7.2.4), at 272,367 to 274,829 _3614 EX28DRAFT_3615: EX28DRAFT_3615 - homoserine kinase (EC 2.7.1.39), at 274,831 to 275,760 _3615 EX28DRAFT_3616: EX28DRAFT_3616 - threonine synthase, at 275,764 to 277,050 _3616 Position (kb) 272 273 274 275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 271.412 kb on - strand, within EX28DRAFT_3612at 271.412 kb on - strand, within EX28DRAFT_3612at 271.581 kb on + strand, within EX28DRAFT_3612at 271.581 kb on + strand, within EX28DRAFT_3612at 271.751 kb on - strand, within EX28DRAFT_3612at 271.751 kb on - strand, within EX28DRAFT_3612at 271.770 kb on + strand, within EX28DRAFT_3612at 271.770 kb on + strand, within EX28DRAFT_3612at 271.771 kb on - strand, within EX28DRAFT_3612at 271.783 kb on + strand, within EX28DRAFT_3612at 271.793 kb on - strand, within EX28DRAFT_3612at 271.793 kb on - strand, within EX28DRAFT_3612at 271.795 kb on + strand, within EX28DRAFT_3612at 271.796 kb on - strand, within EX28DRAFT_3612at 271.874 kb on - strand, within EX28DRAFT_3612at 271.874 kb on - strand, within EX28DRAFT_3612at 272.146 kb on + strandat 272.192 kb on + strandat 272.193 kb on - strandat 272.206 kb on + strandat 272.244 kb on + strand, within EX28DRAFT_3613at 272.245 kb on - strand, within EX28DRAFT_3613at 272.247 kb on + strand, within EX28DRAFT_3613at 272.247 kb on + strand, within EX28DRAFT_3613at 272.247 kb on + strand, within EX28DRAFT_3613at 272.248 kb on - strand, within EX28DRAFT_3613at 272.271 kb on + strand, within EX28DRAFT_3613at 272.320 kb on + strand, within EX28DRAFT_3613at 272.321 kb on - strand, within EX28DRAFT_3613at 272.321 kb on - strand, within EX28DRAFT_3613at 272.360 kb on + strandat 272.391 kb on - strandat 272.574 kb on - strandat 272.757 kb on - strand, within EX28DRAFT_3614at 272.845 kb on - strand, within EX28DRAFT_3614at 273.040 kb on + strand, within EX28DRAFT_3614at 273.064 kb on - strand, within EX28DRAFT_3614at 273.064 kb on - strand, within EX28DRAFT_3614at 273.142 kb on - strand, within EX28DRAFT_3614at 273.381 kb on - strand, within EX28DRAFT_3614at 273.381 kb on - strand, within EX28DRAFT_3614at 273.396 kb on - strand, within EX28DRAFT_3614at 273.396 kb on - strand, within EX28DRAFT_3614at 273.396 kb on - strand, within EX28DRAFT_3614at 273.645 kb on - strand, within EX28DRAFT_3614at 273.852 kb on - strand, within EX28DRAFT_3614at 274.129 kb on - strand, within EX28DRAFT_3614at 274.132 kb on - strand, within EX28DRAFT_3614at 274.180 kb on - strand, within EX28DRAFT_3614at 274.292 kb on + strand, within EX28DRAFT_3614at 274.293 kb on - strand, within EX28DRAFT_3614at 274.415 kb on - strand, within EX28DRAFT_3614at 274.587 kb on - strandat 274.600 kb on - strandat 274.707 kb on + strandat 274.717 kb on - strandat 274.720 kb on - strandat 274.820 kb on - strandat 275.019 kb on + strand, within EX28DRAFT_3615at 275.683 kb on - strandat 275.719 kb on - strandat 275.758 kb on + strandat 275.758 kb on + strandat 275.762 kb on + strandat 275.763 kb on - strandat 275.763 kb on - strandat 275.774 kb on - strandat 275.774 kb on - strandat 275.774 kb on - strandat 275.782 kb on - strandat 275.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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271,412 - EX28DRAFT_3612 0.13 -0.2
271,412 - EX28DRAFT_3612 0.13 -0.2
271,581 + EX28DRAFT_3612 0.38 -0.3
271,581 + EX28DRAFT_3612 0.38 -0.7
271,751 - EX28DRAFT_3612 0.63 +0.3
271,751 - EX28DRAFT_3612 0.63 +0.6
271,770 + EX28DRAFT_3612 0.66 +0.3
271,770 + EX28DRAFT_3612 0.66 +0.2
271,771 - EX28DRAFT_3612 0.66 -0.5
271,783 + EX28DRAFT_3612 0.67 +0.1
271,793 - EX28DRAFT_3612 0.69 +0.1
271,793 - EX28DRAFT_3612 0.69 +0.4
271,795 + EX28DRAFT_3612 0.69 +0.2
271,796 - EX28DRAFT_3612 0.69 +0.7
271,874 - EX28DRAFT_3612 0.81 +0.1
271,874 - EX28DRAFT_3612 0.81 +1.3
272,146 + -0.1
272,192 + -1.3
272,193 - -0.7
272,206 + +0.6
272,244 + EX28DRAFT_3613 0.16 -0.0
272,245 - EX28DRAFT_3613 0.17 -1.3
272,247 + EX28DRAFT_3613 0.19 -1.9
272,247 + EX28DRAFT_3613 0.19 -2.2
272,247 + EX28DRAFT_3613 0.19 -3.0
272,248 - EX28DRAFT_3613 0.19 +0.7
272,271 + EX28DRAFT_3613 0.39 +0.0
272,320 + EX28DRAFT_3613 0.81 +2.1
272,321 - EX28DRAFT_3613 0.81 -4.7
272,321 - EX28DRAFT_3613 0.81 -4.0
272,360 + +2.3
272,391 - +0.4
272,574 - -0.8
272,757 - EX28DRAFT_3614 0.16 -4.2
272,845 - EX28DRAFT_3614 0.19 +0.3
273,040 + EX28DRAFT_3614 0.27 -1.0
273,064 - EX28DRAFT_3614 0.28 -2.1
273,064 - EX28DRAFT_3614 0.28 -2.9
273,142 - EX28DRAFT_3614 0.31 -2.0
273,381 - EX28DRAFT_3614 0.41 +2.3
273,381 - EX28DRAFT_3614 0.41 -1.1
273,396 - EX28DRAFT_3614 0.42 +2.3
273,396 - EX28DRAFT_3614 0.42 -2.0
273,396 - EX28DRAFT_3614 0.42 -0.5
273,645 - EX28DRAFT_3614 0.52 -3.3
273,852 - EX28DRAFT_3614 0.60 -2.4
274,129 - EX28DRAFT_3614 0.72 -3.1
274,132 - EX28DRAFT_3614 0.72 -0.9
274,180 - EX28DRAFT_3614 0.74 -2.0
274,292 + EX28DRAFT_3614 0.78 -3.4
274,293 - EX28DRAFT_3614 0.78 -0.0
274,415 - EX28DRAFT_3614 0.83 -3.2
274,587 - -0.9
274,600 - -1.4
274,707 + +0.7
274,717 - -0.5
274,720 - -4.0
274,820 - -0.7
275,019 + EX28DRAFT_3615 0.20 -1.0
275,683 - +1.0
275,719 - -0.3
275,758 + -2.3
275,758 + -1.0
275,762 + +1.3
275,763 - +0.4
275,763 - +0.7
275,774 - -0.3
275,774 - +0.7
275,774 - -0.3
275,782 - -1.2
275,790 + -1.0

Or see this region's nucleotide sequence