Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3594

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3592 and EX28DRAFT_3593 are separated by 89 nucleotidesEX28DRAFT_3593 and EX28DRAFT_3594 are separated by 61 nucleotidesEX28DRAFT_3594 and EX28DRAFT_3595 are separated by 39 nucleotidesEX28DRAFT_3595 and EX28DRAFT_3596 are separated by 117 nucleotides EX28DRAFT_3592: EX28DRAFT_3592 - phosphopentomutase, at 249,566 to 250,789 _3592 EX28DRAFT_3593: EX28DRAFT_3593 - purine-nucleoside phosphorylase, family 1 (deoD), at 250,879 to 251,601 _3593 EX28DRAFT_3594: EX28DRAFT_3594 - lipoyltransferase and lipoate-protein ligase, at 251,663 to 252,679 _3594 EX28DRAFT_3595: EX28DRAFT_3595 - Uncharacterized membrane protein affecting hemolysin expression, at 252,719 to 253,363 _3595 EX28DRAFT_3596: EX28DRAFT_3596 - phosphoserine phosphatase SerB, at 253,481 to 254,449 _3596 Position (kb) 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1at 250.745 kb on + strandat 250.754 kb on - strandat 250.788 kb on - strandat 250.856 kb on - strandat 250.864 kb on + strandat 250.864 kb on + strandat 250.865 kb on - strandat 250.897 kb on - strandat 250.897 kb on - strandat 251.035 kb on + strand, within EX28DRAFT_3593at 251.036 kb on - strand, within EX28DRAFT_3593at 251.091 kb on + strand, within EX28DRAFT_3593at 251.091 kb on + strand, within EX28DRAFT_3593at 251.091 kb on + strand, within EX28DRAFT_3593at 251.092 kb on - strand, within EX28DRAFT_3593at 251.092 kb on - strand, within EX28DRAFT_3593at 251.092 kb on - strand, within EX28DRAFT_3593at 251.095 kb on + strand, within EX28DRAFT_3593at 251.096 kb on - strand, within EX28DRAFT_3593at 251.096 kb on - strand, within EX28DRAFT_3593at 251.241 kb on + strand, within EX28DRAFT_3593at 251.242 kb on - strand, within EX28DRAFT_3593at 251.359 kb on + strand, within EX28DRAFT_3593at 251.360 kb on - strand, within EX28DRAFT_3593at 251.441 kb on - strand, within EX28DRAFT_3593at 251.441 kb on - strand, within EX28DRAFT_3593at 251.506 kb on - strand, within EX28DRAFT_3593at 251.599 kb on + strandat 251.600 kb on - strandat 251.762 kb on - strandat 251.899 kb on + strand, within EX28DRAFT_3594at 251.900 kb on - strand, within EX28DRAFT_3594at 252.146 kb on - strand, within EX28DRAFT_3594at 252.146 kb on - strand, within EX28DRAFT_3594at 252.186 kb on + strand, within EX28DRAFT_3594at 252.317 kb on - strand, within EX28DRAFT_3594at 252.419 kb on - strand, within EX28DRAFT_3594at 252.500 kb on - strand, within EX28DRAFT_3594at 252.645 kb on + strandat 252.659 kb on - strandat 252.659 kb on - strandat 252.668 kb on + strandat 252.709 kb on + strandat 252.715 kb on - strandat 252.855 kb on - strand, within EX28DRAFT_3595at 252.883 kb on + strand, within EX28DRAFT_3595at 252.884 kb on - strand, within EX28DRAFT_3595at 253.086 kb on + strand, within EX28DRAFT_3595at 253.298 kb on + strand, within EX28DRAFT_3595at 253.299 kb on - strandat 253.390 kb on + strandat 253.391 kb on - strandat 253.391 kb on - strandat 253.391 kb on - strandat 253.405 kb on + strandat 253.406 kb on - strandat 253.432 kb on + strandat 253.468 kb on + strandat 253.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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250,745 + +0.1
250,754 - -0.5
250,788 - +0.4
250,856 - +0.7
250,864 + -0.3
250,864 + +0.2
250,865 - +0.8
250,897 - -0.1
250,897 - -0.1
251,035 + EX28DRAFT_3593 0.22 +0.0
251,036 - EX28DRAFT_3593 0.22 -0.7
251,091 + EX28DRAFT_3593 0.29 -0.9
251,091 + EX28DRAFT_3593 0.29 -0.3
251,091 + EX28DRAFT_3593 0.29 -0.5
251,092 - EX28DRAFT_3593 0.29 -0.8
251,092 - EX28DRAFT_3593 0.29 +0.3
251,092 - EX28DRAFT_3593 0.29 +0.3
251,095 + EX28DRAFT_3593 0.30 -0.2
251,096 - EX28DRAFT_3593 0.30 -0.2
251,096 - EX28DRAFT_3593 0.30 -0.3
251,241 + EX28DRAFT_3593 0.50 +0.4
251,242 - EX28DRAFT_3593 0.50 -0.6
251,359 + EX28DRAFT_3593 0.66 -0.1
251,360 - EX28DRAFT_3593 0.67 -1.5
251,441 - EX28DRAFT_3593 0.78 +1.3
251,441 - EX28DRAFT_3593 0.78 -0.3
251,506 - EX28DRAFT_3593 0.87 +0.3
251,599 + -0.1
251,600 - -0.4
251,762 - +0.3
251,899 + EX28DRAFT_3594 0.23 +0.2
251,900 - EX28DRAFT_3594 0.23 -0.5
252,146 - EX28DRAFT_3594 0.47 -0.4
252,146 - EX28DRAFT_3594 0.47 -0.1
252,186 + EX28DRAFT_3594 0.51 +0.5
252,317 - EX28DRAFT_3594 0.64 -1.0
252,419 - EX28DRAFT_3594 0.74 -0.1
252,500 - EX28DRAFT_3594 0.82 -0.4
252,645 + +0.4
252,659 - +0.8
252,659 - -0.0
252,668 + +1.0
252,709 + -0.4
252,715 - +0.3
252,855 - EX28DRAFT_3595 0.21 +0.3
252,883 + EX28DRAFT_3595 0.25 -0.0
252,884 - EX28DRAFT_3595 0.26 +0.1
253,086 + EX28DRAFT_3595 0.57 +0.0
253,298 + EX28DRAFT_3595 0.90 -0.1
253,299 - +0.1
253,390 + +0.7
253,391 - +0.4
253,391 - -1.1
253,391 - -0.5
253,405 + +0.9
253,406 - -3.6
253,432 + -0.7
253,468 + +0.1
253,479 + -2.9

Or see this region's nucleotide sequence