Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3579 and EX28DRAFT_3580 are separated by 102 nucleotides EX28DRAFT_3580 and EX28DRAFT_3581 overlap by 32 nucleotides EX28DRAFT_3581 and EX28DRAFT_3582 are separated by 20 nucleotides EX28DRAFT_3582 and EX28DRAFT_3583 are separated by 91 nucleotides
EX28DRAFT_3579: EX28DRAFT_3579 - 16S RNA G1207 methylase RsmC, at 237,167 to 238,195
_3579
EX28DRAFT_3580: EX28DRAFT_3580 - DNA polymerase III, psi subunit (EC 2.7.7.7), at 238,298 to 238,711
_3580
EX28DRAFT_3581: EX28DRAFT_3581 - ribosomal-protein-alanine acetyltransferase, at 238,680 to 239,123
_3581
EX28DRAFT_3582: EX28DRAFT_3582 - noncanonical pyrimidine nucleotidase, YjjG family, at 239,144 to 239,821
_3582
EX28DRAFT_3583: EX28DRAFT_3583 - peptide chain release factor 3, at 239,913 to 241,502
_3583
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 237.724 kb on - strand, within EX28DRAFT_3579 at 237.768 kb on + strand, within EX28DRAFT_3579 at 237.769 kb on - strand, within EX28DRAFT_3579 at 237.949 kb on - strand, within EX28DRAFT_3579 at 237.951 kb on + strand, within EX28DRAFT_3579 at 237.951 kb on + strand, within EX28DRAFT_3579 at 238.051 kb on - strand, within EX28DRAFT_3579 at 238.053 kb on + strand, within EX28DRAFT_3579 at 238.054 kb on - strand, within EX28DRAFT_3579 at 238.111 kb on + strand at 238.112 kb on - strand at 238.229 kb on + strand at 238.229 kb on + strand at 238.229 kb on + strand at 238.230 kb on - strand at 238.230 kb on - strand at 238.230 kb on - strand at 238.230 kb on - strand at 238.230 kb on - strand at 238.232 kb on + strand at 238.236 kb on + strand at 238.237 kb on - strand at 238.237 kb on - strand at 238.881 kb on - strand, within EX28DRAFT_3581 at 239.060 kb on + strand, within EX28DRAFT_3581 at 239.065 kb on - strand, within EX28DRAFT_3581 at 239.065 kb on - strand, within EX28DRAFT_3581 at 239.131 kb on + strand at 239.132 kb on - strand at 239.188 kb on + strand at 239.189 kb on - strand at 239.189 kb on - strand at 239.367 kb on + strand, within EX28DRAFT_3582 at 239.586 kb on + strand, within EX28DRAFT_3582 at 239.587 kb on - strand, within EX28DRAFT_3582 at 239.587 kb on - strand, within EX28DRAFT_3582 at 239.590 kb on + strand, within EX28DRAFT_3582 at 239.636 kb on - strand, within EX28DRAFT_3582 at 239.844 kb on + strand at 239.895 kb on - strand at 239.928 kb on + strand at 239.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 237,724 - EX28DRAFT_3579 0.54 +0.8 237,768 + EX28DRAFT_3579 0.58 +0.3 237,769 - EX28DRAFT_3579 0.59 +0.5 237,949 - EX28DRAFT_3579 0.76 +0.4 237,951 + EX28DRAFT_3579 0.76 -1.0 237,951 + EX28DRAFT_3579 0.76 -0.5 238,051 - EX28DRAFT_3579 0.86 -0.1 238,053 + EX28DRAFT_3579 0.86 -0.1 238,054 - EX28DRAFT_3579 0.86 -0.9 238,111 + -0.2 238,112 - +0.1 238,229 + +0.4 238,229 + -0.1 238,229 + +0.9 238,230 - +0.5 238,230 - +0.2 238,230 - -0.3 238,230 - +0.8 238,230 - -1.1 238,232 + +1.2 238,236 + -0.3 238,237 - +0.0 238,237 - +0.0 238,881 - EX28DRAFT_3581 0.45 +0.5 239,060 + EX28DRAFT_3581 0.86 +0.4 239,065 - EX28DRAFT_3581 0.87 +0.5 239,065 - EX28DRAFT_3581 0.87 +0.9 239,131 + +0.1 239,132 - +0.2 239,188 + +0.1 239,189 - +0.4 239,189 - -0.4 239,367 + EX28DRAFT_3582 0.33 +0.2 239,586 + EX28DRAFT_3582 0.65 +0.4 239,587 - EX28DRAFT_3582 0.65 -0.1 239,587 - EX28DRAFT_3582 0.65 +0.2 239,590 + EX28DRAFT_3582 0.66 -2.8 239,636 - EX28DRAFT_3582 0.73 -1.1 239,844 + +0.9 239,895 - +0.1 239,928 + +0.7 239,929 - +0.9
Or see this region's nucleotide sequence