Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3571 and EX28DRAFT_3572 are separated by 95 nucleotides EX28DRAFT_3572 and EX28DRAFT_3573 are separated by 95 nucleotides
EX28DRAFT_3571: EX28DRAFT_3571 - PTS system, lactose/cellobiose family IIC component, at 232,638 to 233,984
_3571
EX28DRAFT_3572: EX28DRAFT_3572 - siderophore-iron reductase FhuF, at 234,080 to 234,868
_3572
EX28DRAFT_3573: EX28DRAFT_3573 - diguanylate cyclase (GGDEF) domain, at 234,964 to 236,028
_3573
Position (kb) 234
235 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 233.151 kb on - strand, within EX28DRAFT_3571 at 233.300 kb on + strand, within EX28DRAFT_3571 at 233.301 kb on - strand, within EX28DRAFT_3571 at 233.301 kb on - strand, within EX28DRAFT_3571 at 233.301 kb on - strand, within EX28DRAFT_3571 at 233.572 kb on - strand, within EX28DRAFT_3571 at 233.636 kb on + strand, within EX28DRAFT_3571 at 233.693 kb on + strand, within EX28DRAFT_3571 at 233.851 kb on + strand at 233.852 kb on - strand at 233.886 kb on + strand at 233.886 kb on + strand at 233.887 kb on - strand at 233.887 kb on - strand at 233.887 kb on - strand at 233.907 kb on + strand at 233.983 kb on - strand at 233.986 kb on + strand at 234.082 kb on - strand at 234.082 kb on - strand at 234.304 kb on - strand, within EX28DRAFT_3572 at 234.323 kb on - strand, within EX28DRAFT_3572 at 234.362 kb on + strand, within EX28DRAFT_3572 at 234.363 kb on - strand, within EX28DRAFT_3572 at 234.534 kb on - strand, within EX28DRAFT_3572 at 234.573 kb on + strand, within EX28DRAFT_3572 at 234.573 kb on + strand, within EX28DRAFT_3572 at 234.574 kb on - strand, within EX28DRAFT_3572 at 234.640 kb on + strand, within EX28DRAFT_3572 at 234.641 kb on - strand, within EX28DRAFT_3572 at 234.641 kb on - strand, within EX28DRAFT_3572 at 234.869 kb on - strand at 234.871 kb on + strand at 234.872 kb on - strand at 234.873 kb on + strand at 234.873 kb on + strand at 234.874 kb on - strand at 234.874 kb on - strand at 234.885 kb on + strand at 234.886 kb on - strand at 234.912 kb on + strand at 234.913 kb on - strand at 235.000 kb on - strand at 235.000 kb on - strand at 235.152 kb on - strand, within EX28DRAFT_3573 at 235.317 kb on + strand, within EX28DRAFT_3573 at 235.318 kb on - strand, within EX28DRAFT_3573 at 235.318 kb on - strand, within EX28DRAFT_3573 at 235.337 kb on + strand, within EX28DRAFT_3573 at 235.337 kb on + strand, within EX28DRAFT_3573 at 235.338 kb on - strand, within EX28DRAFT_3573 at 235.338 kb on - strand, within EX28DRAFT_3573 at 235.434 kb on + strand, within EX28DRAFT_3573 at 235.436 kb on + strand, within EX28DRAFT_3573 at 235.437 kb on - strand, within EX28DRAFT_3573 at 235.586 kb on + strand, within EX28DRAFT_3573 at 235.604 kb on - strand, within EX28DRAFT_3573 at 235.605 kb on + strand, within EX28DRAFT_3573 at 235.605 kb on + strand, within EX28DRAFT_3573 at 235.660 kb on - strand, within EX28DRAFT_3573 at 235.660 kb on - strand, within EX28DRAFT_3573 at 235.730 kb on + strand, within EX28DRAFT_3573 at 235.730 kb on + strand, within EX28DRAFT_3573 at 235.818 kb on + strand, within EX28DRAFT_3573 at 235.818 kb on + strand, within EX28DRAFT_3573 at 235.819 kb on - strand, within EX28DRAFT_3573
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 233,151 - EX28DRAFT_3571 0.38 -0.7 233,300 + EX28DRAFT_3571 0.49 +0.6 233,301 - EX28DRAFT_3571 0.49 +0.0 233,301 - EX28DRAFT_3571 0.49 +0.8 233,301 - EX28DRAFT_3571 0.49 -3.5 233,572 - EX28DRAFT_3571 0.69 +1.0 233,636 + EX28DRAFT_3571 0.74 +0.5 233,693 + EX28DRAFT_3571 0.78 +0.1 233,851 + +0.8 233,852 - -0.2 233,886 + +0.2 233,886 + +0.9 233,887 - -1.1 233,887 - +0.4 233,887 - -1.9 233,907 + -0.0 233,983 - -0.2 233,986 + -0.3 234,082 - -0.2 234,082 - +0.5 234,304 - EX28DRAFT_3572 0.28 -0.4 234,323 - EX28DRAFT_3572 0.31 -0.1 234,362 + EX28DRAFT_3572 0.36 +0.1 234,363 - EX28DRAFT_3572 0.36 +1.5 234,534 - EX28DRAFT_3572 0.58 +1.0 234,573 + EX28DRAFT_3572 0.62 +1.5 234,573 + EX28DRAFT_3572 0.62 -0.4 234,574 - EX28DRAFT_3572 0.63 +0.3 234,640 + EX28DRAFT_3572 0.71 +0.7 234,641 - EX28DRAFT_3572 0.71 +0.1 234,641 - EX28DRAFT_3572 0.71 +0.3 234,869 - +0.4 234,871 + +0.0 234,872 - -0.2 234,873 + -0.6 234,873 + -0.1 234,874 - +0.7 234,874 - +2.3 234,885 + -0.3 234,886 - +0.3 234,912 + -0.7 234,913 - +1.1 235,000 - -0.6 235,000 - -0.2 235,152 - EX28DRAFT_3573 0.18 -1.2 235,317 + EX28DRAFT_3573 0.33 +0.1 235,318 - EX28DRAFT_3573 0.33 -0.1 235,318 - EX28DRAFT_3573 0.33 +0.6 235,337 + EX28DRAFT_3573 0.35 -0.4 235,337 + EX28DRAFT_3573 0.35 -0.4 235,338 - EX28DRAFT_3573 0.35 +0.3 235,338 - EX28DRAFT_3573 0.35 -1.5 235,434 + EX28DRAFT_3573 0.44 +0.4 235,436 + EX28DRAFT_3573 0.44 -0.1 235,437 - EX28DRAFT_3573 0.44 +0.3 235,586 + EX28DRAFT_3573 0.58 +1.9 235,604 - EX28DRAFT_3573 0.60 +0.6 235,605 + EX28DRAFT_3573 0.60 -3.9 235,605 + EX28DRAFT_3573 0.60 -2.4 235,660 - EX28DRAFT_3573 0.65 -0.5 235,660 - EX28DRAFT_3573 0.65 -1.7 235,730 + EX28DRAFT_3573 0.72 +0.6 235,730 + EX28DRAFT_3573 0.72 -0.1 235,818 + EX28DRAFT_3573 0.80 +0.6 235,818 + EX28DRAFT_3573 0.80 +0.7 235,819 - EX28DRAFT_3573 0.80 +0.5
Or see this region's nucleotide sequence