Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3571

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3569 and EX28DRAFT_3570 are separated by 38 nucleotidesEX28DRAFT_3570 and EX28DRAFT_3571 are separated by 328 nucleotidesEX28DRAFT_3571 and EX28DRAFT_3572 are separated by 95 nucleotidesEX28DRAFT_3572 and EX28DRAFT_3573 are separated by 95 nucleotides EX28DRAFT_3569: EX28DRAFT_3569 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 231,126 to 231,812 _3569 EX28DRAFT_3570: EX28DRAFT_3570 - Uncharacterized conserved protein, at 231,851 to 232,309 _3570 EX28DRAFT_3571: EX28DRAFT_3571 - PTS system, lactose/cellobiose family IIC component, at 232,638 to 233,984 _3571 EX28DRAFT_3572: EX28DRAFT_3572 - siderophore-iron reductase FhuF, at 234,080 to 234,868 _3572 EX28DRAFT_3573: EX28DRAFT_3573 - diguanylate cyclase (GGDEF) domain, at 234,964 to 236,028 _3573 Position (kb) 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 231.665 kb on + strand, within EX28DRAFT_3569at 231.665 kb on + strand, within EX28DRAFT_3569at 231.665 kb on + strand, within EX28DRAFT_3569at 231.666 kb on - strand, within EX28DRAFT_3569at 231.684 kb on - strand, within EX28DRAFT_3569at 231.725 kb on - strand, within EX28DRAFT_3569at 231.749 kb on + strandat 231.749 kb on + strandat 231.749 kb on + strandat 231.750 kb on - strandat 231.794 kb on + strandat 231.795 kb on - strandat 231.808 kb on + strandat 231.808 kb on + strandat 231.910 kb on + strand, within EX28DRAFT_3570at 231.910 kb on + strand, within EX28DRAFT_3570at 232.016 kb on + strand, within EX28DRAFT_3570at 232.017 kb on - strand, within EX28DRAFT_3570at 232.235 kb on - strand, within EX28DRAFT_3570at 232.259 kb on + strand, within EX28DRAFT_3570at 232.261 kb on + strand, within EX28DRAFT_3570at 232.293 kb on - strandat 232.328 kb on - strandat 232.328 kb on - strandat 232.364 kb on - strandat 232.367 kb on + strandat 232.386 kb on - strandat 232.469 kb on + strandat 232.472 kb on + strandat 232.479 kb on + strandat 232.479 kb on + strandat 232.480 kb on - strandat 232.483 kb on + strandat 232.484 kb on - strandat 232.496 kb on - strandat 232.505 kb on + strandat 232.506 kb on - strandat 232.506 kb on - strandat 232.506 kb on - strandat 232.517 kb on - strandat 232.580 kb on + strandat 232.580 kb on + strandat 232.690 kb on - strandat 232.754 kb on + strandat 232.754 kb on + strandat 232.755 kb on - strandat 232.773 kb on - strand, within EX28DRAFT_3571at 232.773 kb on - strand, within EX28DRAFT_3571at 232.902 kb on - strand, within EX28DRAFT_3571at 232.916 kb on + strand, within EX28DRAFT_3571at 232.916 kb on + strand, within EX28DRAFT_3571at 232.916 kb on + strand, within EX28DRAFT_3571at 232.917 kb on - strand, within EX28DRAFT_3571at 232.917 kb on - strand, within EX28DRAFT_3571at 232.917 kb on - strand, within EX28DRAFT_3571at 232.926 kb on + strand, within EX28DRAFT_3571at 232.927 kb on - strand, within EX28DRAFT_3571at 232.928 kb on + strand, within EX28DRAFT_3571at 232.928 kb on + strand, within EX28DRAFT_3571at 232.929 kb on - strand, within EX28DRAFT_3571at 232.929 kb on - strand, within EX28DRAFT_3571at 232.929 kb on - strand, within EX28DRAFT_3571at 232.947 kb on + strand, within EX28DRAFT_3571at 232.959 kb on - strand, within EX28DRAFT_3571at 232.965 kb on + strand, within EX28DRAFT_3571at 232.965 kb on + strand, within EX28DRAFT_3571at 232.966 kb on - strand, within EX28DRAFT_3571at 232.995 kb on - strand, within EX28DRAFT_3571at 233.151 kb on - strand, within EX28DRAFT_3571at 233.300 kb on + strand, within EX28DRAFT_3571at 233.301 kb on - strand, within EX28DRAFT_3571at 233.301 kb on - strand, within EX28DRAFT_3571at 233.301 kb on - strand, within EX28DRAFT_3571at 233.572 kb on - strand, within EX28DRAFT_3571at 233.636 kb on + strand, within EX28DRAFT_3571at 233.693 kb on + strand, within EX28DRAFT_3571at 233.851 kb on + strandat 233.852 kb on - strandat 233.886 kb on + strandat 233.886 kb on + strandat 233.887 kb on - strandat 233.887 kb on - strandat 233.887 kb on - strandat 233.907 kb on + strandat 233.983 kb on - strandat 233.986 kb on + strandat 234.082 kb on - strandat 234.082 kb on - strandat 234.304 kb on - strand, within EX28DRAFT_3572at 234.323 kb on - strand, within EX28DRAFT_3572at 234.362 kb on + strand, within EX28DRAFT_3572at 234.363 kb on - strand, within EX28DRAFT_3572at 234.534 kb on - strand, within EX28DRAFT_3572at 234.573 kb on + strand, within EX28DRAFT_3572at 234.573 kb on + strand, within EX28DRAFT_3572at 234.574 kb on - strand, within EX28DRAFT_3572at 234.640 kb on + strand, within EX28DRAFT_3572at 234.641 kb on - strand, within EX28DRAFT_3572at 234.641 kb on - strand, within EX28DRAFT_3572at 234.869 kb on - strandat 234.871 kb on + strandat 234.872 kb on - strandat 234.873 kb on + strandat 234.873 kb on + strandat 234.874 kb on - strandat 234.874 kb on - strandat 234.885 kb on + strandat 234.886 kb on - strandat 234.912 kb on + strandat 234.913 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
231,665 + EX28DRAFT_3569 0.78 +0.4
231,665 + EX28DRAFT_3569 0.78 +0.3
231,665 + EX28DRAFT_3569 0.78 +0.5
231,666 - EX28DRAFT_3569 0.79 +1.7
231,684 - EX28DRAFT_3569 0.81 +1.1
231,725 - EX28DRAFT_3569 0.87 -0.3
231,749 + -1.6
231,749 + -2.9
231,749 + -0.0
231,750 - +0.5
231,794 + -1.1
231,795 - +1.0
231,808 + +0.3
231,808 + +0.4
231,910 + EX28DRAFT_3570 0.13 +0.0
231,910 + EX28DRAFT_3570 0.13 +0.2
232,016 + EX28DRAFT_3570 0.36 -0.4
232,017 - EX28DRAFT_3570 0.36 +0.2
232,235 - EX28DRAFT_3570 0.84 -0.4
232,259 + EX28DRAFT_3570 0.89 -1.2
232,261 + EX28DRAFT_3570 0.89 +0.6
232,293 - -0.1
232,328 - -0.2
232,328 - -0.3
232,364 - -0.5
232,367 + -0.3
232,386 - -1.9
232,469 + -0.7
232,472 + +0.7
232,479 + +0.4
232,479 + -0.1
232,480 - -0.2
232,483 + -0.6
232,484 - +0.3
232,496 - +0.1
232,505 + +0.5
232,506 - +0.0
232,506 - -0.2
232,506 - +0.1
232,517 - -0.3
232,580 + -0.0
232,580 + -0.1
232,690 - -0.1
232,754 + -0.2
232,754 + +0.4
232,755 - -0.0
232,773 - EX28DRAFT_3571 0.10 +0.9
232,773 - EX28DRAFT_3571 0.10 +1.7
232,902 - EX28DRAFT_3571 0.20 -0.5
232,916 + EX28DRAFT_3571 0.21 +0.4
232,916 + EX28DRAFT_3571 0.21 +0.3
232,916 + EX28DRAFT_3571 0.21 -0.0
232,917 - EX28DRAFT_3571 0.21 -0.3
232,917 - EX28DRAFT_3571 0.21 +0.4
232,917 - EX28DRAFT_3571 0.21 +0.0
232,926 + EX28DRAFT_3571 0.21 -0.3
232,927 - EX28DRAFT_3571 0.21 -0.5
232,928 + EX28DRAFT_3571 0.22 -0.4
232,928 + EX28DRAFT_3571 0.22 -1.1
232,929 - EX28DRAFT_3571 0.22 -1.0
232,929 - EX28DRAFT_3571 0.22 +0.3
232,929 - EX28DRAFT_3571 0.22 -0.4
232,947 + EX28DRAFT_3571 0.23 +0.1
232,959 - EX28DRAFT_3571 0.24 +2.2
232,965 + EX28DRAFT_3571 0.24 -0.1
232,965 + EX28DRAFT_3571 0.24 -0.3
232,966 - EX28DRAFT_3571 0.24 +0.5
232,995 - EX28DRAFT_3571 0.27 -0.9
233,151 - EX28DRAFT_3571 0.38 -0.7
233,300 + EX28DRAFT_3571 0.49 +0.6
233,301 - EX28DRAFT_3571 0.49 +0.0
233,301 - EX28DRAFT_3571 0.49 +0.8
233,301 - EX28DRAFT_3571 0.49 -3.5
233,572 - EX28DRAFT_3571 0.69 +1.0
233,636 + EX28DRAFT_3571 0.74 +0.5
233,693 + EX28DRAFT_3571 0.78 +0.1
233,851 + +0.8
233,852 - -0.2
233,886 + +0.2
233,886 + +0.9
233,887 - -1.1
233,887 - +0.4
233,887 - -1.9
233,907 + -0.0
233,983 - -0.2
233,986 + -0.3
234,082 - -0.2
234,082 - +0.5
234,304 - EX28DRAFT_3572 0.28 -0.4
234,323 - EX28DRAFT_3572 0.31 -0.1
234,362 + EX28DRAFT_3572 0.36 +0.1
234,363 - EX28DRAFT_3572 0.36 +1.5
234,534 - EX28DRAFT_3572 0.58 +1.0
234,573 + EX28DRAFT_3572 0.62 +1.5
234,573 + EX28DRAFT_3572 0.62 -0.4
234,574 - EX28DRAFT_3572 0.63 +0.3
234,640 + EX28DRAFT_3572 0.71 +0.7
234,641 - EX28DRAFT_3572 0.71 +0.1
234,641 - EX28DRAFT_3572 0.71 +0.3
234,869 - +0.4
234,871 + +0.0
234,872 - -0.2
234,873 + -0.6
234,873 + -0.1
234,874 - +0.7
234,874 - +2.3
234,885 + -0.3
234,886 - +0.3
234,912 + -0.7
234,913 - +1.1

Or see this region's nucleotide sequence