Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3548

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3547 and EX28DRAFT_3548 are separated by 270 nucleotidesEX28DRAFT_3548 and EX28DRAFT_3549 are separated by 83 nucleotides EX28DRAFT_3547: EX28DRAFT_3547 - 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit/4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit, at 210,995 to 212,272 _3547 EX28DRAFT_3548: EX28DRAFT_3548 - homoprotocatechuate degradation operon regulator, HpaR, at 212,543 to 212,983 _3548 EX28DRAFT_3549: EX28DRAFT_3549 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 213,067 to 214,731 _3549 Position (kb) 212 213Strain fitness (log2 ratio) -2 -1 0 1at 211.590 kb on + strand, within EX28DRAFT_3547at 211.610 kb on + strand, within EX28DRAFT_3547at 211.610 kb on + strand, within EX28DRAFT_3547at 212.159 kb on - strandat 212.190 kb on + strandat 212.190 kb on + strandat 212.278 kb on + strandat 212.278 kb on + strandat 212.278 kb on + strandat 212.278 kb on + strandat 212.279 kb on - strandat 212.279 kb on - strandat 212.804 kb on + strand, within EX28DRAFT_3548at 212.804 kb on + strand, within EX28DRAFT_3548at 212.805 kb on - strand, within EX28DRAFT_3548at 212.838 kb on - strand, within EX28DRAFT_3548at 212.938 kb on + strand, within EX28DRAFT_3548at 212.939 kb on - strand, within EX28DRAFT_3548at 213.071 kb on + strandat 213.071 kb on + strandat 213.071 kb on + strandat 213.116 kb on + strandat 213.128 kb on + strandat 213.129 kb on - strandat 213.261 kb on + strand, within EX28DRAFT_3549at 213.261 kb on + strand, within EX28DRAFT_3549at 213.287 kb on - strand, within EX28DRAFT_3549at 213.351 kb on + strand, within EX28DRAFT_3549at 213.351 kb on + strand, within EX28DRAFT_3549at 213.351 kb on + strand, within EX28DRAFT_3549at 213.388 kb on + strand, within EX28DRAFT_3549at 213.447 kb on + strand, within EX28DRAFT_3549at 213.448 kb on - strand, within EX28DRAFT_3549at 213.451 kb on + strand, within EX28DRAFT_3549at 213.451 kb on + strand, within EX28DRAFT_3549at 213.451 kb on + strand, within EX28DRAFT_3549at 213.452 kb on - strand, within EX28DRAFT_3549at 213.457 kb on - strand, within EX28DRAFT_3549at 213.457 kb on - strand, within EX28DRAFT_3549at 213.457 kb on - strand, within EX28DRAFT_3549at 213.541 kb on + strand, within EX28DRAFT_3549at 213.565 kb on + strand, within EX28DRAFT_3549at 213.565 kb on + strand, within EX28DRAFT_3549at 213.565 kb on + strand, within EX28DRAFT_3549at 213.565 kb on + strand, within EX28DRAFT_3549at 213.574 kb on + strand, within EX28DRAFT_3549at 213.642 kb on + strand, within EX28DRAFT_3549at 213.840 kb on + strand, within EX28DRAFT_3549at 213.880 kb on - strand, within EX28DRAFT_3549at 213.898 kb on + strand, within EX28DRAFT_3549at 213.899 kb on - strand, within EX28DRAFT_3549at 213.948 kb on + strand, within EX28DRAFT_3549

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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211,590 + EX28DRAFT_3547 0.47 +1.3
211,610 + EX28DRAFT_3547 0.48 -0.2
211,610 + EX28DRAFT_3547 0.48 +1.1
212,159 - +0.1
212,190 + +1.7
212,190 + -0.1
212,278 + -0.4
212,278 + -0.6
212,278 + +0.0
212,278 + -0.4
212,279 - +0.1
212,279 - -2.4
212,804 + EX28DRAFT_3548 0.59 -0.4
212,804 + EX28DRAFT_3548 0.59 -1.3
212,805 - EX28DRAFT_3548 0.59 +0.0
212,838 - EX28DRAFT_3548 0.67 -0.4
212,938 + EX28DRAFT_3548 0.90 -0.3
212,939 - EX28DRAFT_3548 0.90 -0.6
213,071 + -0.1
213,071 + +1.2
213,071 + -0.4
213,116 + -1.3
213,128 + +0.7
213,129 - +0.4
213,261 + EX28DRAFT_3549 0.12 -1.0
213,261 + EX28DRAFT_3549 0.12 -0.2
213,287 - EX28DRAFT_3549 0.13 +1.3
213,351 + EX28DRAFT_3549 0.17 -0.1
213,351 + EX28DRAFT_3549 0.17 +0.3
213,351 + EX28DRAFT_3549 0.17 +0.1
213,388 + EX28DRAFT_3549 0.19 +0.4
213,447 + EX28DRAFT_3549 0.23 -2.7
213,448 - EX28DRAFT_3549 0.23 -0.1
213,451 + EX28DRAFT_3549 0.23 -0.1
213,451 + EX28DRAFT_3549 0.23 +0.8
213,451 + EX28DRAFT_3549 0.23 -0.2
213,452 - EX28DRAFT_3549 0.23 -0.2
213,457 - EX28DRAFT_3549 0.23 -1.3
213,457 - EX28DRAFT_3549 0.23 +0.5
213,457 - EX28DRAFT_3549 0.23 +0.7
213,541 + EX28DRAFT_3549 0.28 -1.0
213,565 + EX28DRAFT_3549 0.30 -0.3
213,565 + EX28DRAFT_3549 0.30 +0.1
213,565 + EX28DRAFT_3549 0.30 +0.5
213,565 + EX28DRAFT_3549 0.30 +0.9
213,574 + EX28DRAFT_3549 0.30 +0.1
213,642 + EX28DRAFT_3549 0.35 -0.2
213,840 + EX28DRAFT_3549 0.46 -0.4
213,880 - EX28DRAFT_3549 0.49 +0.6
213,898 + EX28DRAFT_3549 0.50 +0.2
213,899 - EX28DRAFT_3549 0.50 -0.3
213,948 + EX28DRAFT_3549 0.53 -0.5

Or see this region's nucleotide sequence