Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3526

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3524 and EX28DRAFT_3525 overlap by 1 nucleotidesEX28DRAFT_3525 and EX28DRAFT_3526 are separated by 0 nucleotidesEX28DRAFT_3526 and EX28DRAFT_3527 are separated by 51 nucleotides EX28DRAFT_3524: EX28DRAFT_3524 - Protein of unknown function (DUF2778), at 188,530 to 188,892 _3524 EX28DRAFT_3525: EX28DRAFT_3525 - hypothetical protein, at 188,892 to 189,404 _3525 EX28DRAFT_3526: EX28DRAFT_3526 - type VI secretion system effector, Hcp1 family, at 189,405 to 189,896 _3526 EX28DRAFT_3527: EX28DRAFT_3527 - Restriction endonuclease, at 189,948 to 191,130 _3527 Position (kb) 189 190Strain fitness (log2 ratio) -2 -1 0 1at 188.671 kb on - strand, within EX28DRAFT_3524at 188.731 kb on - strand, within EX28DRAFT_3524at 188.731 kb on - strand, within EX28DRAFT_3524at 188.980 kb on + strand, within EX28DRAFT_3525at 189.056 kb on + strand, within EX28DRAFT_3525at 189.197 kb on - strand, within EX28DRAFT_3525at 189.206 kb on - strand, within EX28DRAFT_3525at 189.206 kb on - strand, within EX28DRAFT_3525at 189.231 kb on - strand, within EX28DRAFT_3525at 189.422 kb on + strandat 189.422 kb on + strandat 189.422 kb on + strandat 189.423 kb on - strandat 189.450 kb on - strandat 189.455 kb on - strand, within EX28DRAFT_3526at 189.510 kb on + strand, within EX28DRAFT_3526at 189.511 kb on - strand, within EX28DRAFT_3526at 189.520 kb on + strand, within EX28DRAFT_3526at 189.520 kb on + strand, within EX28DRAFT_3526at 189.520 kb on + strand, within EX28DRAFT_3526at 189.521 kb on - strand, within EX28DRAFT_3526at 189.616 kb on - strand, within EX28DRAFT_3526at 189.624 kb on - strand, within EX28DRAFT_3526at 189.644 kb on + strand, within EX28DRAFT_3526at 189.898 kb on + strandat 189.898 kb on + strandat 189.899 kb on - strandat 189.899 kb on - strandat 189.950 kb on - strandat 189.963 kb on + strandat 190.014 kb on + strandat 190.043 kb on + strandat 190.043 kb on + strandat 190.062 kb on + strandat 190.080 kb on + strand, within EX28DRAFT_3527at 190.081 kb on - strand, within EX28DRAFT_3527at 190.091 kb on + strand, within EX28DRAFT_3527at 190.091 kb on + strand, within EX28DRAFT_3527at 190.092 kb on - strand, within EX28DRAFT_3527at 190.198 kb on - strand, within EX28DRAFT_3527at 190.223 kb on + strand, within EX28DRAFT_3527at 190.223 kb on + strand, within EX28DRAFT_3527at 190.224 kb on - strand, within EX28DRAFT_3527at 190.224 kb on - strand, within EX28DRAFT_3527at 190.235 kb on + strand, within EX28DRAFT_3527at 190.236 kb on - strand, within EX28DRAFT_3527at 190.282 kb on - strand, within EX28DRAFT_3527at 190.388 kb on - strand, within EX28DRAFT_3527at 190.534 kb on + strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.535 kb on - strand, within EX28DRAFT_3527at 190.537 kb on + strand, within EX28DRAFT_3527at 190.538 kb on - strand, within EX28DRAFT_3527at 190.582 kb on + strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.583 kb on - strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.668 kb on + strand, within EX28DRAFT_3527at 190.767 kb on - strand, within EX28DRAFT_3527at 190.805 kb on + strand, within EX28DRAFT_3527at 190.847 kb on + strand, within EX28DRAFT_3527at 190.858 kb on + strand, within EX28DRAFT_3527at 190.858 kb on + strand, within EX28DRAFT_3527at 190.858 kb on + strand, within EX28DRAFT_3527at 190.859 kb on - strand, within EX28DRAFT_3527at 190.863 kb on - strand, within EX28DRAFT_3527at 190.867 kb on + strand, within EX28DRAFT_3527at 190.868 kb on - strand, within EX28DRAFT_3527

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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188,671 - EX28DRAFT_3524 0.39 -0.6
188,731 - EX28DRAFT_3524 0.55 -1.4
188,731 - EX28DRAFT_3524 0.55 -1.7
188,980 + EX28DRAFT_3525 0.17 +0.2
189,056 + EX28DRAFT_3525 0.32 +0.2
189,197 - EX28DRAFT_3525 0.59 -2.1
189,206 - EX28DRAFT_3525 0.61 -0.0
189,206 - EX28DRAFT_3525 0.61 -0.1
189,231 - EX28DRAFT_3525 0.66 -1.2
189,422 + -0.1
189,422 + +0.0
189,422 + +0.1
189,423 - +0.5
189,450 - +1.0
189,455 - EX28DRAFT_3526 0.10 +0.5
189,510 + EX28DRAFT_3526 0.21 -1.4
189,511 - EX28DRAFT_3526 0.22 -0.4
189,520 + EX28DRAFT_3526 0.23 -1.3
189,520 + EX28DRAFT_3526 0.23 +0.1
189,520 + EX28DRAFT_3526 0.23 -0.2
189,521 - EX28DRAFT_3526 0.24 +0.9
189,616 - EX28DRAFT_3526 0.43 +1.3
189,624 - EX28DRAFT_3526 0.45 -0.3
189,644 + EX28DRAFT_3526 0.49 -0.4
189,898 + +0.2
189,898 + +0.7
189,899 - -1.7
189,899 - -0.5
189,950 - -0.7
189,963 + -1.2
190,014 + -0.3
190,043 + -0.2
190,043 + +0.2
190,062 + -0.1
190,080 + EX28DRAFT_3527 0.11 +0.4
190,081 - EX28DRAFT_3527 0.11 +1.4
190,091 + EX28DRAFT_3527 0.12 +0.2
190,091 + EX28DRAFT_3527 0.12 +0.0
190,092 - EX28DRAFT_3527 0.12 -0.4
190,198 - EX28DRAFT_3527 0.21 +0.4
190,223 + EX28DRAFT_3527 0.23 +0.3
190,223 + EX28DRAFT_3527 0.23 +0.1
190,224 - EX28DRAFT_3527 0.23 -0.0
190,224 - EX28DRAFT_3527 0.23 -1.6
190,235 + EX28DRAFT_3527 0.24 +0.1
190,236 - EX28DRAFT_3527 0.24 +0.2
190,282 - EX28DRAFT_3527 0.28 -0.8
190,388 - EX28DRAFT_3527 0.37 -0.2
190,534 + EX28DRAFT_3527 0.50 -0.5
190,535 - EX28DRAFT_3527 0.50 -0.6
190,535 - EX28DRAFT_3527 0.50 +0.2
190,535 - EX28DRAFT_3527 0.50 -1.6
190,535 - EX28DRAFT_3527 0.50 +0.3
190,537 + EX28DRAFT_3527 0.50 +0.3
190,538 - EX28DRAFT_3527 0.50 +0.1
190,582 + EX28DRAFT_3527 0.54 +0.3
190,583 - EX28DRAFT_3527 0.54 +0.0
190,583 - EX28DRAFT_3527 0.54 -0.7
190,583 - EX28DRAFT_3527 0.54 -0.4
190,583 - EX28DRAFT_3527 0.54 -0.2
190,668 + EX28DRAFT_3527 0.61 +0.2
190,668 + EX28DRAFT_3527 0.61 +0.2
190,668 + EX28DRAFT_3527 0.61 -0.5
190,668 + EX28DRAFT_3527 0.61 +0.3
190,767 - EX28DRAFT_3527 0.69 -0.4
190,805 + EX28DRAFT_3527 0.72 -0.2
190,847 + EX28DRAFT_3527 0.76 -0.2
190,858 + EX28DRAFT_3527 0.77 +0.7
190,858 + EX28DRAFT_3527 0.77 -0.5
190,858 + EX28DRAFT_3527 0.77 -0.2
190,859 - EX28DRAFT_3527 0.77 +0.1
190,863 - EX28DRAFT_3527 0.77 -0.4
190,867 + EX28DRAFT_3527 0.78 -0.3
190,868 - EX28DRAFT_3527 0.78 +0.2

Or see this region's nucleotide sequence