Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3519 and EX28DRAFT_3520 are separated by 148 nucleotides EX28DRAFT_3520 and EX28DRAFT_3521 overlap by 1 nucleotides EX28DRAFT_3521 and EX28DRAFT_3522 overlap by 11 nucleotides
EX28DRAFT_3519: EX28DRAFT_3519 - Predicted transcriptional regulators, at 183,560 to 184,255
_3519
EX28DRAFT_3520: EX28DRAFT_3520 - Transcriptional regulators, at 184,404 to 184,874
_3520
EX28DRAFT_3521: EX28DRAFT_3521 - Multidrug resistance efflux pump, at 184,874 to 185,938
_3521
EX28DRAFT_3522: EX28DRAFT_3522 - Protein of unknown function (DUF2955), at 185,928 to 187,019
_3522
Position (kb) 184
185
186 Strain fitness (log2 ratio) -2
-1
0
1
2 at 183.926 kb on + strand, within EX28DRAFT_3519 at 183.962 kb on + strand, within EX28DRAFT_3519 at 184.235 kb on - strand at 184.647 kb on + strand, within EX28DRAFT_3520 at 184.671 kb on + strand, within EX28DRAFT_3520 at 184.672 kb on - strand, within EX28DRAFT_3520 at 184.720 kb on + strand, within EX28DRAFT_3520 at 184.721 kb on - strand, within EX28DRAFT_3520 at 184.723 kb on + strand, within EX28DRAFT_3520 at 184.724 kb on - strand, within EX28DRAFT_3520 at 184.724 kb on - strand, within EX28DRAFT_3520 at 184.724 kb on - strand, within EX28DRAFT_3520 at 184.752 kb on + strand, within EX28DRAFT_3520 at 184.790 kb on + strand, within EX28DRAFT_3520 at 184.791 kb on - strand, within EX28DRAFT_3520 at 184.857 kb on - strand at 184.948 kb on + strand at 185.046 kb on + strand, within EX28DRAFT_3521 at 185.046 kb on + strand, within EX28DRAFT_3521 at 185.047 kb on - strand, within EX28DRAFT_3521 at 185.477 kb on + strand, within EX28DRAFT_3521 at 185.478 kb on - strand, within EX28DRAFT_3521 at 185.478 kb on - strand, within EX28DRAFT_3521 at 185.858 kb on + strand at 185.927 kb on + strand at 185.928 kb on - strand at 185.933 kb on + strand at 185.937 kb on - strand at 185.948 kb on + strand at 185.948 kb on + strand at 185.949 kb on - strand at 185.952 kb on - strand at 185.972 kb on + strand at 185.994 kb on + strand at 185.997 kb on - strand at 186.137 kb on + strand, within EX28DRAFT_3522 at 186.161 kb on + strand, within EX28DRAFT_3522 at 186.211 kb on - strand, within EX28DRAFT_3522 at 186.261 kb on - strand, within EX28DRAFT_3522 at 186.278 kb on + strand, within EX28DRAFT_3522 at 186.348 kb on - strand, within EX28DRAFT_3522 at 186.438 kb on + strand, within EX28DRAFT_3522 at 186.438 kb on + strand, within EX28DRAFT_3522 at 186.438 kb on + strand, within EX28DRAFT_3522 at 186.628 kb on - strand, within EX28DRAFT_3522 at 186.688 kb on - strand, within EX28DRAFT_3522 at 186.715 kb on - strand, within EX28DRAFT_3522 at 186.731 kb on + strand, within EX28DRAFT_3522 at 186.732 kb on - strand, within EX28DRAFT_3522 at 186.732 kb on - strand, within EX28DRAFT_3522 at 186.846 kb on - strand, within EX28DRAFT_3522 at 186.897 kb on + strand, within EX28DRAFT_3522
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 183,926 + EX28DRAFT_3519 0.53 -1.0 183,962 + EX28DRAFT_3519 0.58 -1.8 184,235 - -0.7 184,647 + EX28DRAFT_3520 0.52 +0.2 184,671 + EX28DRAFT_3520 0.57 +1.6 184,672 - EX28DRAFT_3520 0.57 -0.2 184,720 + EX28DRAFT_3520 0.67 +0.1 184,721 - EX28DRAFT_3520 0.67 +0.4 184,723 + EX28DRAFT_3520 0.68 -0.7 184,724 - EX28DRAFT_3520 0.68 +0.5 184,724 - EX28DRAFT_3520 0.68 -0.1 184,724 - EX28DRAFT_3520 0.68 -0.2 184,752 + EX28DRAFT_3520 0.74 +0.4 184,790 + EX28DRAFT_3520 0.82 -0.1 184,791 - EX28DRAFT_3520 0.82 -0.1 184,857 - +0.2 184,948 + -0.7 185,046 + EX28DRAFT_3521 0.16 -1.2 185,046 + EX28DRAFT_3521 0.16 -0.1 185,047 - EX28DRAFT_3521 0.16 -2.5 185,477 + EX28DRAFT_3521 0.57 +0.9 185,478 - EX28DRAFT_3521 0.57 +0.3 185,478 - EX28DRAFT_3521 0.57 -1.1 185,858 + +2.7 185,927 + -0.2 185,928 - -1.1 185,933 + +0.1 185,937 - -0.1 185,948 + +0.0 185,948 + +0.1 185,949 - -0.6 185,952 - +0.1 185,972 + -0.5 185,994 + +0.7 185,997 - -2.5 186,137 + EX28DRAFT_3522 0.19 -0.1 186,161 + EX28DRAFT_3522 0.21 +0.2 186,211 - EX28DRAFT_3522 0.26 -0.5 186,261 - EX28DRAFT_3522 0.30 +0.0 186,278 + EX28DRAFT_3522 0.32 +1.0 186,348 - EX28DRAFT_3522 0.38 -0.2 186,438 + EX28DRAFT_3522 0.47 +0.3 186,438 + EX28DRAFT_3522 0.47 +0.7 186,438 + EX28DRAFT_3522 0.47 -1.1 186,628 - EX28DRAFT_3522 0.64 +0.3 186,688 - EX28DRAFT_3522 0.70 -1.4 186,715 - EX28DRAFT_3522 0.72 +0.3 186,731 + EX28DRAFT_3522 0.74 -0.5 186,732 - EX28DRAFT_3522 0.74 +0.1 186,732 - EX28DRAFT_3522 0.74 +0.6 186,846 - EX28DRAFT_3522 0.84 +0.4 186,897 + EX28DRAFT_3522 0.89 +0.5
Or see this region's nucleotide sequence