Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3513 and EX28DRAFT_3514 are separated by 103 nucleotides EX28DRAFT_3514 and EX28DRAFT_3515 overlap by 14 nucleotides EX28DRAFT_3515 and EX28DRAFT_3516 are separated by 100 nucleotides
EX28DRAFT_3513: EX28DRAFT_3513 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 178,345 to 179,733
_3513
EX28DRAFT_3514: EX28DRAFT_3514 - alkylhydroperoxidase AhpD family core domain, at 179,837 to 180,316
_3514
EX28DRAFT_3515: EX28DRAFT_3515 - Transcriptional regulator, at 180,303 to 181,205
_3515
EX28DRAFT_3516: EX28DRAFT_3516 - NAD-dependent aldehyde dehydrogenases, at 181,306 to 182,721
_3516
Position (kb) 179
180
181 Strain fitness (log2 ratio) -1
0
1
2 at 178.842 kb on + strand, within EX28DRAFT_3513 at 178.919 kb on + strand, within EX28DRAFT_3513 at 179.066 kb on + strand, within EX28DRAFT_3513 at 179.067 kb on - strand, within EX28DRAFT_3513 at 179.242 kb on + strand, within EX28DRAFT_3513 at 179.242 kb on + strand, within EX28DRAFT_3513 at 179.786 kb on + strand at 179.786 kb on + strand at 179.866 kb on + strand at 179.981 kb on - strand, within EX28DRAFT_3514 at 179.981 kb on - strand, within EX28DRAFT_3514 at 180.045 kb on - strand, within EX28DRAFT_3514 at 180.385 kb on + strand at 180.385 kb on + strand at 180.385 kb on + strand at 180.386 kb on - strand at 180.423 kb on + strand, within EX28DRAFT_3515 at 180.426 kb on + strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.505 kb on - strand, within EX28DRAFT_3515 at 180.598 kb on + strand, within EX28DRAFT_3515 at 180.686 kb on - strand, within EX28DRAFT_3515 at 180.785 kb on - strand, within EX28DRAFT_3515 at 180.785 kb on - strand, within EX28DRAFT_3515 at 180.858 kb on - strand, within EX28DRAFT_3515 at 180.858 kb on - strand, within EX28DRAFT_3515 at 181.173 kb on + strand at 181.174 kb on - strand at 181.205 kb on + strand at 181.205 kb on + strand at 181.303 kb on + strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.305 kb on + strand at 181.305 kb on + strand at 181.306 kb on - strand at 181.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 178,842 + EX28DRAFT_3513 0.36 +1.2 178,919 + EX28DRAFT_3513 0.41 +0.3 179,066 + EX28DRAFT_3513 0.52 -0.2 179,067 - EX28DRAFT_3513 0.52 -0.2 179,242 + EX28DRAFT_3513 0.65 +0.2 179,242 + EX28DRAFT_3513 0.65 -0.2 179,786 + -0.1 179,786 + -0.1 179,866 + -0.1 179,981 - EX28DRAFT_3514 0.30 +0.3 179,981 - EX28DRAFT_3514 0.30 +1.3 180,045 - EX28DRAFT_3514 0.43 +0.6 180,385 + -0.8 180,385 + +0.4 180,385 + +0.4 180,386 - -0.4 180,423 + EX28DRAFT_3515 0.13 +2.0 180,426 + EX28DRAFT_3515 0.14 -0.6 180,467 - EX28DRAFT_3515 0.18 -0.1 180,467 - EX28DRAFT_3515 0.18 +0.4 180,467 - EX28DRAFT_3515 0.18 +0.4 180,505 - EX28DRAFT_3515 0.22 +0.7 180,598 + EX28DRAFT_3515 0.33 -0.0 180,686 - EX28DRAFT_3515 0.42 +2.3 180,785 - EX28DRAFT_3515 0.53 -0.5 180,785 - EX28DRAFT_3515 0.53 -0.5 180,858 - EX28DRAFT_3515 0.61 -0.8 180,858 - EX28DRAFT_3515 0.61 -1.5 181,173 + +0.1 181,174 - +0.2 181,205 + +1.4 181,205 + +1.2 181,303 + +2.4 181,304 - +0.4 181,304 - +0.3 181,304 - +1.6 181,304 - +0.0 181,304 - -0.0 181,304 - -0.2 181,305 + +0.2 181,305 + +0.6 181,306 - -0.8 181,306 - +1.3
Or see this region's nucleotide sequence