Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3511 and EX28DRAFT_3512 are separated by 176 nucleotides EX28DRAFT_3512 and EX28DRAFT_3513 are separated by 84 nucleotides EX28DRAFT_3513 and EX28DRAFT_3514 are separated by 103 nucleotides EX28DRAFT_3514 and EX28DRAFT_3515 overlap by 14 nucleotides
EX28DRAFT_3511: EX28DRAFT_3511 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 176,504 to 177,922
_3511
EX28DRAFT_3512: EX28DRAFT_3512 - Uncharacterized conserved small protein, at 178,099 to 178,260
_3512
EX28DRAFT_3513: EX28DRAFT_3513 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 178,345 to 179,733
_3513
EX28DRAFT_3514: EX28DRAFT_3514 - alkylhydroperoxidase AhpD family core domain, at 179,837 to 180,316
_3514
EX28DRAFT_3515: EX28DRAFT_3515 - Transcriptional regulator, at 180,303 to 181,205
_3515
Position (kb) 178
179
180 Strain fitness (log2 ratio) -1
0
1
2 at 177.498 kb on + strand, within EX28DRAFT_3511 at 177.498 kb on + strand, within EX28DRAFT_3511 at 177.498 kb on + strand, within EX28DRAFT_3511 at 177.499 kb on - strand, within EX28DRAFT_3511 at 177.499 kb on - strand, within EX28DRAFT_3511 at 177.520 kb on + strand, within EX28DRAFT_3511 at 177.732 kb on + strand, within EX28DRAFT_3511 at 177.927 kb on + strand at 177.945 kb on + strand at 177.993 kb on + strand at 178.012 kb on + strand at 178.012 kb on + strand at 178.042 kb on + strand at 178.082 kb on - strand at 178.108 kb on + strand at 178.108 kb on + strand at 178.134 kb on + strand, within EX28DRAFT_3512 at 178.135 kb on - strand, within EX28DRAFT_3512 at 178.265 kb on - strand at 178.265 kb on - strand at 178.406 kb on + strand at 178.422 kb on + strand at 178.422 kb on + strand at 178.425 kb on - strand at 178.602 kb on - strand, within EX28DRAFT_3513 at 178.796 kb on + strand, within EX28DRAFT_3513 at 178.827 kb on + strand, within EX28DRAFT_3513 at 178.828 kb on - strand, within EX28DRAFT_3513 at 178.842 kb on + strand, within EX28DRAFT_3513 at 178.919 kb on + strand, within EX28DRAFT_3513 at 179.066 kb on + strand, within EX28DRAFT_3513 at 179.067 kb on - strand, within EX28DRAFT_3513 at 179.242 kb on + strand, within EX28DRAFT_3513 at 179.242 kb on + strand, within EX28DRAFT_3513 at 179.786 kb on + strand at 179.786 kb on + strand at 179.866 kb on + strand at 179.981 kb on - strand, within EX28DRAFT_3514 at 179.981 kb on - strand, within EX28DRAFT_3514 at 180.045 kb on - strand, within EX28DRAFT_3514 at 180.385 kb on + strand at 180.385 kb on + strand at 180.385 kb on + strand at 180.386 kb on - strand at 180.423 kb on + strand, within EX28DRAFT_3515 at 180.426 kb on + strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.505 kb on - strand, within EX28DRAFT_3515 at 180.598 kb on + strand, within EX28DRAFT_3515 at 180.686 kb on - strand, within EX28DRAFT_3515
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 177,498 + EX28DRAFT_3511 0.70 +0.5 177,498 + EX28DRAFT_3511 0.70 +0.1 177,498 + EX28DRAFT_3511 0.70 +0.1 177,499 - EX28DRAFT_3511 0.70 -0.1 177,499 - EX28DRAFT_3511 0.70 -0.2 177,520 + EX28DRAFT_3511 0.72 +0.2 177,732 + EX28DRAFT_3511 0.87 -0.2 177,927 + -1.7 177,945 + +1.3 177,993 + +0.8 178,012 + -0.7 178,012 + +0.2 178,042 + -0.3 178,082 - -0.0 178,108 + +0.3 178,108 + +0.0 178,134 + EX28DRAFT_3512 0.22 -0.3 178,135 - EX28DRAFT_3512 0.22 +0.9 178,265 - -0.1 178,265 - +0.4 178,406 + +0.3 178,422 + +0.9 178,422 + +0.0 178,425 - -0.1 178,602 - EX28DRAFT_3513 0.19 -0.4 178,796 + EX28DRAFT_3513 0.32 +0.8 178,827 + EX28DRAFT_3513 0.35 -0.1 178,828 - EX28DRAFT_3513 0.35 +0.5 178,842 + EX28DRAFT_3513 0.36 +1.2 178,919 + EX28DRAFT_3513 0.41 +0.3 179,066 + EX28DRAFT_3513 0.52 -0.2 179,067 - EX28DRAFT_3513 0.52 -0.2 179,242 + EX28DRAFT_3513 0.65 +0.2 179,242 + EX28DRAFT_3513 0.65 -0.2 179,786 + -0.1 179,786 + -0.1 179,866 + -0.1 179,981 - EX28DRAFT_3514 0.30 +0.3 179,981 - EX28DRAFT_3514 0.30 +1.3 180,045 - EX28DRAFT_3514 0.43 +0.6 180,385 + -0.8 180,385 + +0.4 180,385 + +0.4 180,386 - -0.4 180,423 + EX28DRAFT_3515 0.13 +2.0 180,426 + EX28DRAFT_3515 0.14 -0.6 180,467 - EX28DRAFT_3515 0.18 -0.1 180,467 - EX28DRAFT_3515 0.18 +0.4 180,467 - EX28DRAFT_3515 0.18 +0.4 180,505 - EX28DRAFT_3515 0.22 +0.7 180,598 + EX28DRAFT_3515 0.33 -0.0 180,686 - EX28DRAFT_3515 0.42 +2.3
Or see this region's nucleotide sequence