Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3501 and EX28DRAFT_3502 are separated by 218 nucleotides EX28DRAFT_3502 and EX28DRAFT_3503 are separated by 61 nucleotides EX28DRAFT_3503 and EX28DRAFT_3504 overlap by 4 nucleotides EX28DRAFT_3504 and EX28DRAFT_3505 are separated by 23 nucleotides EX28DRAFT_3505 and EX28DRAFT_3506 are separated by 9 nucleotides
EX28DRAFT_3501: EX28DRAFT_3501 - Predicted metal-dependent hydrolase with the TIM-barrel fold, at 163,989 to 165,860
_3501
EX28DRAFT_3502: EX28DRAFT_3502 - Amidases related to nicotinamidase, at 166,079 to 166,765
_3502
EX28DRAFT_3503: EX28DRAFT_3503 - XapX domain, at 166,827 to 167,048
_3503
EX28DRAFT_3504: EX28DRAFT_3504 - XapX domain, at 167,045 to 167,305
_3504
EX28DRAFT_3505: EX28DRAFT_3505 - Response regulator receiver domain, at 167,329 to 167,709
_3505
EX28DRAFT_3506: EX28DRAFT_3506 - PAS domain S-box, at 167,719 to 173,301
_3506
Position (kb) 166
167 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 165.124 kb on + strand, within EX28DRAFT_3501 at 165.412 kb on + strand, within EX28DRAFT_3501 at 165.619 kb on + strand, within EX28DRAFT_3501 at 165.620 kb on - strand, within EX28DRAFT_3501 at 165.861 kb on - strand at 165.926 kb on + strand at 165.928 kb on + strand at 165.928 kb on + strand at 165.929 kb on - strand at 165.929 kb on - strand at 165.929 kb on - strand at 165.933 kb on + strand at 165.933 kb on + strand at 165.943 kb on - strand at 165.943 kb on - strand at 165.944 kb on + strand at 165.952 kb on + strand at 165.953 kb on - strand at 165.953 kb on - strand at 165.954 kb on + strand at 165.955 kb on - strand at 165.955 kb on - strand at 165.958 kb on + strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.960 kb on + strand at 165.961 kb on - strand at 165.961 kb on - strand at 165.965 kb on - strand at 165.974 kb on + strand at 165.975 kb on - strand at 165.975 kb on - strand at 165.975 kb on - strand at 165.986 kb on + strand at 165.987 kb on - strand at 165.990 kb on + strand at 166.078 kb on + strand at 166.079 kb on - strand at 166.171 kb on + strand, within EX28DRAFT_3502 at 166.172 kb on - strand, within EX28DRAFT_3502 at 166.286 kb on + strand, within EX28DRAFT_3502 at 166.333 kb on + strand, within EX28DRAFT_3502 at 166.334 kb on - strand, within EX28DRAFT_3502 at 166.472 kb on + strand, within EX28DRAFT_3502 at 166.482 kb on - strand, within EX28DRAFT_3502 at 166.482 kb on - strand, within EX28DRAFT_3502 at 166.483 kb on + strand, within EX28DRAFT_3502 at 166.484 kb on - strand, within EX28DRAFT_3502 at 166.625 kb on + strand, within EX28DRAFT_3502 at 166.686 kb on - strand, within EX28DRAFT_3502 at 166.686 kb on - strand, within EX28DRAFT_3502 at 166.691 kb on + strand, within EX28DRAFT_3502 at 166.691 kb on + strand, within EX28DRAFT_3502 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.878 kb on + strand, within EX28DRAFT_3503 at 166.879 kb on - strand, within EX28DRAFT_3503 at 166.879 kb on - strand, within EX28DRAFT_3503 at 167.059 kb on - strand at 167.091 kb on + strand, within EX28DRAFT_3504 at 167.097 kb on - strand, within EX28DRAFT_3504 at 167.200 kb on - strand, within EX28DRAFT_3504 at 167.219 kb on - strand, within EX28DRAFT_3504 at 167.425 kb on - strand, within EX28DRAFT_3505 at 167.444 kb on + strand, within EX28DRAFT_3505 at 167.528 kb on + strand, within EX28DRAFT_3505 at 167.529 kb on - strand, within EX28DRAFT_3505 at 167.578 kb on - strand, within EX28DRAFT_3505 at 167.619 kb on + strand, within EX28DRAFT_3505 at 167.679 kb on + strand at 167.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 165,124 + EX28DRAFT_3501 0.61 -0.3 165,412 + EX28DRAFT_3501 0.76 +3.5 165,619 + EX28DRAFT_3501 0.87 +0.6 165,620 - EX28DRAFT_3501 0.87 +0.2 165,861 - -1.7 165,926 + -0.2 165,928 + +0.3 165,928 + -0.7 165,929 - -0.1 165,929 - -0.1 165,929 - +0.2 165,933 + -0.4 165,933 + +1.8 165,943 - -0.9 165,943 - -0.5 165,944 + +1.6 165,952 + +0.6 165,953 - +0.3 165,953 - -0.5 165,954 + +0.2 165,955 - +0.5 165,955 - +0.4 165,958 + +0.5 165,959 - +0.5 165,959 - -0.2 165,959 - -1.5 165,959 - +0.7 165,959 - +0.0 165,960 + +0.0 165,961 - -0.0 165,961 - -0.8 165,965 - +0.5 165,974 + +0.4 165,975 - +0.4 165,975 - +0.5 165,975 - -0.6 165,986 + -0.5 165,987 - -0.0 165,990 + -0.6 166,078 + -0.2 166,079 - +0.5 166,171 + EX28DRAFT_3502 0.13 +0.0 166,172 - EX28DRAFT_3502 0.14 -1.8 166,286 + EX28DRAFT_3502 0.30 +1.3 166,333 + EX28DRAFT_3502 0.37 +0.2 166,334 - EX28DRAFT_3502 0.37 -0.2 166,472 + EX28DRAFT_3502 0.57 -0.1 166,482 - EX28DRAFT_3502 0.59 +0.8 166,482 - EX28DRAFT_3502 0.59 +0.1 166,483 + EX28DRAFT_3502 0.59 +0.8 166,484 - EX28DRAFT_3502 0.59 -0.1 166,625 + EX28DRAFT_3502 0.79 -0.2 166,686 - EX28DRAFT_3502 0.88 -0.1 166,686 - EX28DRAFT_3502 0.88 +0.5 166,691 + EX28DRAFT_3502 0.89 +0.1 166,691 + EX28DRAFT_3502 0.89 +1.4 166,878 + EX28DRAFT_3503 0.23 +1.4 166,878 + EX28DRAFT_3503 0.23 -0.1 166,878 + EX28DRAFT_3503 0.23 -0.1 166,878 + EX28DRAFT_3503 0.23 -0.2 166,879 - EX28DRAFT_3503 0.23 -0.7 166,879 - EX28DRAFT_3503 0.23 -1.7 167,059 - +1.0 167,091 + EX28DRAFT_3504 0.18 -0.3 167,097 - EX28DRAFT_3504 0.20 +0.5 167,200 - EX28DRAFT_3504 0.59 +1.3 167,219 - EX28DRAFT_3504 0.67 -1.1 167,425 - EX28DRAFT_3505 0.25 -0.4 167,444 + EX28DRAFT_3505 0.30 -0.3 167,528 + EX28DRAFT_3505 0.52 -0.7 167,529 - EX28DRAFT_3505 0.52 -0.4 167,578 - EX28DRAFT_3505 0.65 -0.4 167,619 + EX28DRAFT_3505 0.76 -0.2 167,679 + -0.6 167,680 - +1.3
Or see this region's nucleotide sequence