Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3499 and EX28DRAFT_3500 overlap by 4 nucleotides EX28DRAFT_3500 and EX28DRAFT_3501 overlap by 1 nucleotides EX28DRAFT_3501 and EX28DRAFT_3502 are separated by 218 nucleotides EX28DRAFT_3502 and EX28DRAFT_3503 are separated by 61 nucleotides
EX28DRAFT_3499: EX28DRAFT_3499 - Arabinose efflux permease, at 161,966 to 163,585
_3499
EX28DRAFT_3500: EX28DRAFT_3500 - Predicted membrane protein, at 163,582 to 163,989
_3500
EX28DRAFT_3501: EX28DRAFT_3501 - Predicted metal-dependent hydrolase with the TIM-barrel fold, at 163,989 to 165,860
_3501
EX28DRAFT_3502: EX28DRAFT_3502 - Amidases related to nicotinamidase, at 166,079 to 166,765
_3502
EX28DRAFT_3503: EX28DRAFT_3503 - XapX domain, at 166,827 to 167,048
_3503
Position (kb) 163
164
165
166 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 163.299 kb on + strand, within EX28DRAFT_3499 at 163.300 kb on - strand, within EX28DRAFT_3499 at 163.300 kb on - strand, within EX28DRAFT_3499 at 163.303 kb on + strand, within EX28DRAFT_3499 at 163.303 kb on + strand, within EX28DRAFT_3499 at 163.303 kb on + strand, within EX28DRAFT_3499 at 163.304 kb on - strand, within EX28DRAFT_3499 at 163.304 kb on - strand, within EX28DRAFT_3499 at 163.366 kb on + strand, within EX28DRAFT_3499 at 163.767 kb on - strand, within EX28DRAFT_3500 at 163.767 kb on - strand, within EX28DRAFT_3500 at 163.910 kb on + strand, within EX28DRAFT_3500 at 163.910 kb on + strand, within EX28DRAFT_3500 at 163.911 kb on - strand, within EX28DRAFT_3500 at 164.320 kb on + strand, within EX28DRAFT_3501 at 164.321 kb on - strand, within EX28DRAFT_3501 at 164.363 kb on + strand, within EX28DRAFT_3501 at 164.363 kb on + strand, within EX28DRAFT_3501 at 164.461 kb on + strand, within EX28DRAFT_3501 at 164.461 kb on + strand, within EX28DRAFT_3501 at 164.462 kb on - strand, within EX28DRAFT_3501 at 164.524 kb on + strand, within EX28DRAFT_3501 at 164.638 kb on + strand, within EX28DRAFT_3501 at 164.639 kb on - strand, within EX28DRAFT_3501 at 164.764 kb on - strand, within EX28DRAFT_3501 at 164.764 kb on - strand, within EX28DRAFT_3501 at 165.060 kb on - strand, within EX28DRAFT_3501 at 165.124 kb on + strand, within EX28DRAFT_3501 at 165.412 kb on + strand, within EX28DRAFT_3501 at 165.619 kb on + strand, within EX28DRAFT_3501 at 165.620 kb on - strand, within EX28DRAFT_3501 at 165.861 kb on - strand at 165.926 kb on + strand at 165.928 kb on + strand at 165.928 kb on + strand at 165.929 kb on - strand at 165.929 kb on - strand at 165.929 kb on - strand at 165.933 kb on + strand at 165.933 kb on + strand at 165.943 kb on - strand at 165.943 kb on - strand at 165.944 kb on + strand at 165.952 kb on + strand at 165.953 kb on - strand at 165.953 kb on - strand at 165.954 kb on + strand at 165.955 kb on - strand at 165.955 kb on - strand at 165.958 kb on + strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.959 kb on - strand at 165.960 kb on + strand at 165.961 kb on - strand at 165.961 kb on - strand at 165.965 kb on - strand at 165.974 kb on + strand at 165.975 kb on - strand at 165.975 kb on - strand at 165.975 kb on - strand at 165.986 kb on + strand at 165.987 kb on - strand at 165.990 kb on + strand at 166.078 kb on + strand at 166.079 kb on - strand at 166.171 kb on + strand, within EX28DRAFT_3502 at 166.172 kb on - strand, within EX28DRAFT_3502 at 166.286 kb on + strand, within EX28DRAFT_3502 at 166.333 kb on + strand, within EX28DRAFT_3502 at 166.334 kb on - strand, within EX28DRAFT_3502 at 166.472 kb on + strand, within EX28DRAFT_3502 at 166.482 kb on - strand, within EX28DRAFT_3502 at 166.482 kb on - strand, within EX28DRAFT_3502 at 166.483 kb on + strand, within EX28DRAFT_3502 at 166.484 kb on - strand, within EX28DRAFT_3502 at 166.625 kb on + strand, within EX28DRAFT_3502 at 166.686 kb on - strand, within EX28DRAFT_3502 at 166.686 kb on - strand, within EX28DRAFT_3502 at 166.691 kb on + strand, within EX28DRAFT_3502 at 166.691 kb on + strand, within EX28DRAFT_3502
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 163,299 + EX28DRAFT_3499 0.82 +0.7 163,300 - EX28DRAFT_3499 0.82 +0.1 163,300 - EX28DRAFT_3499 0.82 -0.9 163,303 + EX28DRAFT_3499 0.83 -0.4 163,303 + EX28DRAFT_3499 0.83 -0.2 163,303 + EX28DRAFT_3499 0.83 -0.1 163,304 - EX28DRAFT_3499 0.83 +0.3 163,304 - EX28DRAFT_3499 0.83 +0.0 163,366 + EX28DRAFT_3499 0.86 +0.6 163,767 - EX28DRAFT_3500 0.45 +0.2 163,767 - EX28DRAFT_3500 0.45 -0.6 163,910 + EX28DRAFT_3500 0.80 +0.6 163,910 + EX28DRAFT_3500 0.80 -0.1 163,911 - EX28DRAFT_3500 0.81 -0.1 164,320 + EX28DRAFT_3501 0.18 +0.3 164,321 - EX28DRAFT_3501 0.18 -0.1 164,363 + EX28DRAFT_3501 0.20 -0.2 164,363 + EX28DRAFT_3501 0.20 -0.2 164,461 + EX28DRAFT_3501 0.25 +0.3 164,461 + EX28DRAFT_3501 0.25 +0.6 164,462 - EX28DRAFT_3501 0.25 -1.0 164,524 + EX28DRAFT_3501 0.29 +0.0 164,638 + EX28DRAFT_3501 0.35 -0.1 164,639 - EX28DRAFT_3501 0.35 +0.4 164,764 - EX28DRAFT_3501 0.41 -0.1 164,764 - EX28DRAFT_3501 0.41 -1.0 165,060 - EX28DRAFT_3501 0.57 +0.1 165,124 + EX28DRAFT_3501 0.61 -0.3 165,412 + EX28DRAFT_3501 0.76 +3.5 165,619 + EX28DRAFT_3501 0.87 +0.6 165,620 - EX28DRAFT_3501 0.87 +0.2 165,861 - -1.7 165,926 + -0.2 165,928 + +0.3 165,928 + -0.7 165,929 - -0.1 165,929 - -0.1 165,929 - +0.2 165,933 + -0.4 165,933 + +1.8 165,943 - -0.9 165,943 - -0.5 165,944 + +1.6 165,952 + +0.6 165,953 - +0.3 165,953 - -0.5 165,954 + +0.2 165,955 - +0.5 165,955 - +0.4 165,958 + +0.5 165,959 - +0.5 165,959 - -0.2 165,959 - -1.5 165,959 - +0.7 165,959 - +0.0 165,960 + +0.0 165,961 - -0.0 165,961 - -0.8 165,965 - +0.5 165,974 + +0.4 165,975 - +0.4 165,975 - +0.5 165,975 - -0.6 165,986 + -0.5 165,987 - -0.0 165,990 + -0.6 166,078 + -0.2 166,079 - +0.5 166,171 + EX28DRAFT_3502 0.13 +0.0 166,172 - EX28DRAFT_3502 0.14 -1.8 166,286 + EX28DRAFT_3502 0.30 +1.3 166,333 + EX28DRAFT_3502 0.37 +0.2 166,334 - EX28DRAFT_3502 0.37 -0.2 166,472 + EX28DRAFT_3502 0.57 -0.1 166,482 - EX28DRAFT_3502 0.59 +0.8 166,482 - EX28DRAFT_3502 0.59 +0.1 166,483 + EX28DRAFT_3502 0.59 +0.8 166,484 - EX28DRAFT_3502 0.59 -0.1 166,625 + EX28DRAFT_3502 0.79 -0.2 166,686 - EX28DRAFT_3502 0.88 -0.1 166,686 - EX28DRAFT_3502 0.88 +0.5 166,691 + EX28DRAFT_3502 0.89 +0.1 166,691 + EX28DRAFT_3502 0.89 +1.4
Or see this region's nucleotide sequence