Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3475 and EX28DRAFT_3476 are separated by 19 nucleotides EX28DRAFT_3476 and EX28DRAFT_3477 are separated by 53 nucleotides EX28DRAFT_3477 and EX28DRAFT_3478 are separated by 12 nucleotides EX28DRAFT_3478 and EX28DRAFT_3479 are separated by 108 nucleotides EX28DRAFT_3479 and EX28DRAFT_3480 overlap by 8 nucleotides
EX28DRAFT_3475: EX28DRAFT_3475 - hypothetical protein, at 143,469 to 143,654
_3475
EX28DRAFT_3476: EX28DRAFT_3476 - hypothetical protein, at 143,674 to 143,841
_3476
EX28DRAFT_3477: EX28DRAFT_3477 - Helix-turn-helix domain, at 143,895 to 144,509
_3477
EX28DRAFT_3478: EX28DRAFT_3478 - hypothetical protein, at 144,522 to 144,803
_3478
EX28DRAFT_3479: EX28DRAFT_3479 - hypothetical protein, at 144,912 to 145,295
_3479
EX28DRAFT_3480: EX28DRAFT_3480 - hypothetical protein, at 145,288 to 145,623
_3480
Position (kb)
143
144
145 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 142.914 kb on + strand at 142.915 kb on - strand at 142.924 kb on + strand at 142.924 kb on + strand at 142.924 kb on + strand at 142.925 kb on - strand at 142.925 kb on - strand at 142.925 kb on - strand at 142.932 kb on - strand at 142.934 kb on + strand at 142.934 kb on + strand at 142.943 kb on + strand at 142.944 kb on - strand at 142.944 kb on - strand at 142.990 kb on - strand at 142.990 kb on - strand at 142.995 kb on + strand at 142.996 kb on - strand at 143.006 kb on + strand at 143.014 kb on + strand at 143.054 kb on - strand at 143.057 kb on + strand at 143.058 kb on - strand at 143.060 kb on + strand at 143.073 kb on - strand at 143.073 kb on - strand at 143.089 kb on - strand at 143.089 kb on - strand at 143.172 kb on + strand at 143.209 kb on - strand at 143.233 kb on + strand at 143.234 kb on - strand at 143.234 kb on - strand at 143.234 kb on - strand at 143.349 kb on - strand at 143.351 kb on - strand at 143.355 kb on + strand at 143.356 kb on - strand at 143.356 kb on - strand at 143.356 kb on - strand at 143.359 kb on - strand at 143.366 kb on - strand at 143.368 kb on - strand at 143.445 kb on - strand at 143.545 kb on + strand, within EX28DRAFT_3475 at 143.545 kb on + strand, within EX28DRAFT_3475 at 143.789 kb on - strand, within EX28DRAFT_3476 at 143.856 kb on + strand at 143.860 kb on - strand at 143.881 kb on + strand at 144.013 kb on - strand, within EX28DRAFT_3477 at 144.033 kb on - strand, within EX28DRAFT_3477 at 144.116 kb on + strand, within EX28DRAFT_3477 at 144.142 kb on + strand, within EX28DRAFT_3477 at 144.167 kb on + strand, within EX28DRAFT_3477 at 144.173 kb on + strand, within EX28DRAFT_3477 at 144.174 kb on - strand, within EX28DRAFT_3477 at 144.174 kb on - strand, within EX28DRAFT_3477 at 144.192 kb on + strand, within EX28DRAFT_3477 at 144.193 kb on - strand, within EX28DRAFT_3477 at 144.193 kb on - strand, within EX28DRAFT_3477 at 144.220 kb on + strand, within EX28DRAFT_3477 at 144.257 kb on - strand, within EX28DRAFT_3477 at 144.321 kb on - strand, within EX28DRAFT_3477 at 144.340 kb on - strand, within EX28DRAFT_3477 at 144.421 kb on + strand, within EX28DRAFT_3477 at 144.421 kb on + strand, within EX28DRAFT_3477 at 144.475 kb on - strand at 144.539 kb on - strand at 144.572 kb on + strand, within EX28DRAFT_3478 at 144.614 kb on - strand, within EX28DRAFT_3478 at 144.668 kb on - strand, within EX28DRAFT_3478 at 144.704 kb on - strand, within EX28DRAFT_3478 at 144.751 kb on - strand, within EX28DRAFT_3478 at 144.840 kb on + strand at 145.084 kb on + strand, within EX28DRAFT_3479 at 145.100 kb on - strand, within EX28DRAFT_3479 at 145.123 kb on - strand, within EX28DRAFT_3479 at 145.183 kb on + strand, within EX28DRAFT_3479 at 145.183 kb on + strand, within EX28DRAFT_3479 at 145.200 kb on - strand, within EX28DRAFT_3479 at 145.215 kb on + strand, within EX28DRAFT_3479 at 145.215 kb on + strand, within EX28DRAFT_3479 at 145.215 kb on + strand, within EX28DRAFT_3479 at 145.216 kb on - strand, within EX28DRAFT_3479 at 145.217 kb on + strand, within EX28DRAFT_3479 at 145.294 kb on - strand at 145.294 kb on - strand at 145.296 kb on + strand at 145.297 kb on - strand at 145.297 kb on - strand at 145.300 kb on + strand at 145.301 kb on - strand at 145.318 kb on - strand at 145.365 kb on - strand, within EX28DRAFT_3480 at 145.382 kb on + strand, within EX28DRAFT_3480
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 142,914 + +1.2 142,915 - -0.1 142,924 + -0.3 142,924 + -0.1 142,924 + +0.5 142,925 - +0.2 142,925 - +2.1 142,925 - -2.2 142,932 - +0.6 142,934 + -0.4 142,934 + +0.3 142,943 + -0.3 142,944 - +0.1 142,944 - -1.2 142,990 - -1.1 142,990 - -0.1 142,995 + +0.2 142,996 - -1.3 143,006 + +0.6 143,014 + -3.7 143,054 - +0.2 143,057 + +0.4 143,058 - -0.7 143,060 + -0.3 143,073 - -0.0 143,073 - +0.3 143,089 - -0.2 143,089 - -1.7 143,172 + +0.3 143,209 - -1.7 143,233 + +0.2 143,234 - -0.5 143,234 - -0.2 143,234 - +2.0 143,349 - -0.1 143,351 - -0.7 143,355 + -0.1 143,356 - -0.2 143,356 - -0.1 143,356 - -0.1 143,359 - +0.1 143,366 - -0.0 143,368 - +0.6 143,445 - +0.2 143,545 + EX28DRAFT_3475 0.41 -0.3 143,545 + EX28DRAFT_3475 0.41 +0.4 143,789 - EX28DRAFT_3476 0.68 +0.4 143,856 + +0.6 143,860 - +0.1 143,881 + +0.3 144,013 - EX28DRAFT_3477 0.19 +0.5 144,033 - EX28DRAFT_3477 0.22 +0.5 144,116 + EX28DRAFT_3477 0.36 -1.0 144,142 + EX28DRAFT_3477 0.40 -0.3 144,167 + EX28DRAFT_3477 0.44 -0.1 144,173 + EX28DRAFT_3477 0.45 -1.7 144,174 - EX28DRAFT_3477 0.45 +1.0 144,174 - EX28DRAFT_3477 0.45 +0.4 144,192 + EX28DRAFT_3477 0.48 +0.7 144,193 - EX28DRAFT_3477 0.48 +2.9 144,193 - EX28DRAFT_3477 0.48 +0.3 144,220 + EX28DRAFT_3477 0.53 +0.4 144,257 - EX28DRAFT_3477 0.59 +0.4 144,321 - EX28DRAFT_3477 0.69 +0.8 144,340 - EX28DRAFT_3477 0.72 +0.5 144,421 + EX28DRAFT_3477 0.86 -0.1 144,421 + EX28DRAFT_3477 0.86 -3.4 144,475 - +0.4 144,539 - +0.6 144,572 + EX28DRAFT_3478 0.18 -0.4 144,614 - EX28DRAFT_3478 0.33 -1.6 144,668 - EX28DRAFT_3478 0.52 -0.2 144,704 - EX28DRAFT_3478 0.65 -1.0 144,751 - EX28DRAFT_3478 0.81 -1.0 144,840 + +0.3 145,084 + EX28DRAFT_3479 0.45 -0.3 145,100 - EX28DRAFT_3479 0.49 -0.4 145,123 - EX28DRAFT_3479 0.55 +0.5 145,183 + EX28DRAFT_3479 0.71 -0.1 145,183 + EX28DRAFT_3479 0.71 -1.4 145,200 - EX28DRAFT_3479 0.75 -0.0 145,215 + EX28DRAFT_3479 0.79 -0.2 145,215 + EX28DRAFT_3479 0.79 +0.1 145,215 + EX28DRAFT_3479 0.79 -1.2 145,216 - EX28DRAFT_3479 0.79 -0.2 145,217 + EX28DRAFT_3479 0.79 -1.2 145,294 - +2.2 145,294 - +0.3 145,296 + -0.8 145,297 - -0.2 145,297 - -0.5 145,300 + +0.4 145,301 - -0.2 145,318 - +0.3 145,365 - EX28DRAFT_3480 0.23 -0.5 145,382 + EX28DRAFT_3480 0.28 +0.6
Or see this region's nucleotide sequence