Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3437

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3434 and EX28DRAFT_3435 overlap by 11 nucleotidesEX28DRAFT_3435 and EX28DRAFT_3436 are separated by 3 nucleotidesEX28DRAFT_3436 and EX28DRAFT_3437 are separated by 97 nucleotidesEX28DRAFT_3437 and EX28DRAFT_3438 are separated by 376 nucleotides EX28DRAFT_3434: EX28DRAFT_3434 - addiction module antitoxin, RelB/DinJ family, at 104,477 to 104,719 _3434 EX28DRAFT_3435: EX28DRAFT_3435 - addiction module toxin, RelE/StbE family, at 104,709 to 104,993 _3435 EX28DRAFT_3436: EX28DRAFT_3436 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 104,997 to 105,461 _3436 EX28DRAFT_3437: EX28DRAFT_3437 - ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2), at 105,559 to 107,697 _3437 EX28DRAFT_3438: EX28DRAFT_3438 - alpha,alpha-phosphotrehalase, at 108,074 to 109,717 _3438 Position (kb) 105 106 107 108Strain fitness (log2 ratio) -2 -1 0 1 2 3at 104.586 kb on - strand, within EX28DRAFT_3434at 104.630 kb on - strand, within EX28DRAFT_3434at 104.696 kb on - strandat 104.696 kb on - strandat 104.701 kb on + strandat 104.715 kb on + strandat 104.716 kb on - strandat 104.773 kb on + strand, within EX28DRAFT_3435at 104.774 kb on - strand, within EX28DRAFT_3435at 104.785 kb on + strand, within EX28DRAFT_3435at 104.786 kb on - strand, within EX28DRAFT_3435at 104.786 kb on - strand, within EX28DRAFT_3435at 104.926 kb on + strand, within EX28DRAFT_3435at 104.946 kb on - strand, within EX28DRAFT_3435at 104.991 kb on + strandat 104.992 kb on - strandat 104.995 kb on + strandat 105.016 kb on - strandat 105.058 kb on - strand, within EX28DRAFT_3436at 105.140 kb on + strand, within EX28DRAFT_3436at 105.140 kb on + strand, within EX28DRAFT_3436at 105.142 kb on + strand, within EX28DRAFT_3436at 105.142 kb on + strand, within EX28DRAFT_3436at 105.143 kb on - strand, within EX28DRAFT_3436at 105.162 kb on - strand, within EX28DRAFT_3436at 105.162 kb on - strand, within EX28DRAFT_3436at 105.162 kb on - strand, within EX28DRAFT_3436at 105.442 kb on + strandat 105.442 kb on + strandat 105.445 kb on + strandat 105.446 kb on - strandat 105.446 kb on - strandat 105.446 kb on - strandat 105.462 kb on - strandat 105.981 kb on - strand, within EX28DRAFT_3437at 105.981 kb on - strand, within EX28DRAFT_3437at 105.981 kb on - strand, within EX28DRAFT_3437at 105.984 kb on - strand, within EX28DRAFT_3437at 105.984 kb on - strand, within EX28DRAFT_3437at 106.074 kb on - strand, within EX28DRAFT_3437at 106.176 kb on - strand, within EX28DRAFT_3437at 106.176 kb on - strand, within EX28DRAFT_3437at 106.176 kb on - strand, within EX28DRAFT_3437at 106.179 kb on + strand, within EX28DRAFT_3437at 106.179 kb on + strand, within EX28DRAFT_3437at 106.179 kb on + strand, within EX28DRAFT_3437at 106.180 kb on - strand, within EX28DRAFT_3437at 106.180 kb on - strand, within EX28DRAFT_3437at 106.180 kb on - strand, within EX28DRAFT_3437at 106.180 kb on - strand, within EX28DRAFT_3437at 106.180 kb on - strand, within EX28DRAFT_3437at 106.226 kb on + strand, within EX28DRAFT_3437at 106.226 kb on + strand, within EX28DRAFT_3437at 106.315 kb on - strand, within EX28DRAFT_3437at 106.316 kb on + strand, within EX28DRAFT_3437at 106.317 kb on - strand, within EX28DRAFT_3437at 106.317 kb on - strand, within EX28DRAFT_3437at 106.362 kb on + strand, within EX28DRAFT_3437at 106.595 kb on + strand, within EX28DRAFT_3437at 106.596 kb on - strand, within EX28DRAFT_3437at 106.596 kb on - strand, within EX28DRAFT_3437at 106.614 kb on - strand, within EX28DRAFT_3437at 106.658 kb on + strand, within EX28DRAFT_3437at 106.658 kb on + strand, within EX28DRAFT_3437at 106.865 kb on - strand, within EX28DRAFT_3437at 106.895 kb on + strand, within EX28DRAFT_3437at 107.044 kb on - strand, within EX28DRAFT_3437at 107.044 kb on - strand, within EX28DRAFT_3437at 107.044 kb on - strand, within EX28DRAFT_3437at 107.133 kb on + strand, within EX28DRAFT_3437at 107.134 kb on - strand, within EX28DRAFT_3437at 107.279 kb on + strand, within EX28DRAFT_3437at 107.280 kb on - strand, within EX28DRAFT_3437at 107.456 kb on + strand, within EX28DRAFT_3437at 107.456 kb on + strand, within EX28DRAFT_3437at 107.457 kb on - strand, within EX28DRAFT_3437at 107.478 kb on - strand, within EX28DRAFT_3437at 107.744 kb on + strandat 107.745 kb on - strandat 107.745 kb on - strandat 107.757 kb on + strandat 107.758 kb on - strandat 107.758 kb on - strandat 107.822 kb on + strandat 107.823 kb on - strandat 107.856 kb on - strandat 107.860 kb on - strandat 107.893 kb on + strandat 107.897 kb on + strandat 107.898 kb on - strandat 107.898 kb on - strandat 107.898 kb on - strandat 107.898 kb on - strandat 107.948 kb on + strandat 107.963 kb on - strandat 108.160 kb on + strandat 108.348 kb on + strand, within EX28DRAFT_3438at 108.349 kb on - strand, within EX28DRAFT_3438at 108.349 kb on - strand, within EX28DRAFT_3438at 108.399 kb on + strand, within EX28DRAFT_3438at 108.400 kb on - strand, within EX28DRAFT_3438at 108.400 kb on - strand, within EX28DRAFT_3438at 108.640 kb on + strand, within EX28DRAFT_3438at 108.643 kb on - strand, within EX28DRAFT_3438

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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104,586 - EX28DRAFT_3434 0.45 -1.2
104,630 - EX28DRAFT_3434 0.63 -0.2
104,696 - +0.1
104,696 - -0.1
104,701 + -0.1
104,715 + -0.3
104,716 - +0.4
104,773 + EX28DRAFT_3435 0.22 +0.7
104,774 - EX28DRAFT_3435 0.23 +0.6
104,785 + EX28DRAFT_3435 0.27 -0.5
104,786 - EX28DRAFT_3435 0.27 -0.6
104,786 - EX28DRAFT_3435 0.27 -0.9
104,926 + EX28DRAFT_3435 0.76 +0.3
104,946 - EX28DRAFT_3435 0.83 +0.4
104,991 + +0.5
104,992 - -0.4
104,995 + +0.1
105,016 - +0.4
105,058 - EX28DRAFT_3436 0.13 +0.4
105,140 + EX28DRAFT_3436 0.31 -0.0
105,140 + EX28DRAFT_3436 0.31 +0.3
105,142 + EX28DRAFT_3436 0.31 -0.9
105,142 + EX28DRAFT_3436 0.31 +0.2
105,143 - EX28DRAFT_3436 0.31 -1.1
105,162 - EX28DRAFT_3436 0.35 -0.3
105,162 - EX28DRAFT_3436 0.35 -0.0
105,162 - EX28DRAFT_3436 0.35 -1.9
105,442 + -0.1
105,442 + -0.5
105,445 + +0.4
105,446 - -0.2
105,446 - +0.2
105,446 - +0.5
105,462 - +0.7
105,981 - EX28DRAFT_3437 0.20 +0.3
105,981 - EX28DRAFT_3437 0.20 +0.5
105,981 - EX28DRAFT_3437 0.20 +1.9
105,984 - EX28DRAFT_3437 0.20 -0.7
105,984 - EX28DRAFT_3437 0.20 -0.3
106,074 - EX28DRAFT_3437 0.24 +0.6
106,176 - EX28DRAFT_3437 0.29 +0.7
106,176 - EX28DRAFT_3437 0.29 +0.6
106,176 - EX28DRAFT_3437 0.29 +0.4
106,179 + EX28DRAFT_3437 0.29 +3.0
106,179 + EX28DRAFT_3437 0.29 -0.5
106,179 + EX28DRAFT_3437 0.29 -1.1
106,180 - EX28DRAFT_3437 0.29 +1.0
106,180 - EX28DRAFT_3437 0.29 +1.3
106,180 - EX28DRAFT_3437 0.29 +0.2
106,180 - EX28DRAFT_3437 0.29 +0.5
106,180 - EX28DRAFT_3437 0.29 +0.7
106,226 + EX28DRAFT_3437 0.31 +0.3
106,226 + EX28DRAFT_3437 0.31 -0.1
106,315 - EX28DRAFT_3437 0.35 +0.3
106,316 + EX28DRAFT_3437 0.35 -1.0
106,317 - EX28DRAFT_3437 0.35 -0.3
106,317 - EX28DRAFT_3437 0.35 -0.3
106,362 + EX28DRAFT_3437 0.38 +0.0
106,595 + EX28DRAFT_3437 0.48 -1.1
106,596 - EX28DRAFT_3437 0.48 +0.1
106,596 - EX28DRAFT_3437 0.48 +0.3
106,614 - EX28DRAFT_3437 0.49 -2.1
106,658 + EX28DRAFT_3437 0.51 +0.2
106,658 + EX28DRAFT_3437 0.51 -1.0
106,865 - EX28DRAFT_3437 0.61 +0.1
106,895 + EX28DRAFT_3437 0.62 +0.4
107,044 - EX28DRAFT_3437 0.69 -1.0
107,044 - EX28DRAFT_3437 0.69 +0.6
107,044 - EX28DRAFT_3437 0.69 +0.8
107,133 + EX28DRAFT_3437 0.74 -2.1
107,134 - EX28DRAFT_3437 0.74 +0.2
107,279 + EX28DRAFT_3437 0.80 +0.5
107,280 - EX28DRAFT_3437 0.80 +0.8
107,456 + EX28DRAFT_3437 0.89 +0.4
107,456 + EX28DRAFT_3437 0.89 +0.0
107,457 - EX28DRAFT_3437 0.89 +1.8
107,478 - EX28DRAFT_3437 0.90 +0.6
107,744 + -0.1
107,745 - -1.3
107,745 - -0.9
107,757 + +0.3
107,758 - -0.0
107,758 - -1.0
107,822 + +0.0
107,823 - -0.4
107,856 - -1.1
107,860 - -1.1
107,893 + +0.0
107,897 + +0.4
107,898 - +0.4
107,898 - +0.5
107,898 - -0.0
107,898 - -0.4
107,948 + -0.6
107,963 - -0.5
108,160 + -0.0
108,348 + EX28DRAFT_3438 0.17 +0.9
108,349 - EX28DRAFT_3438 0.17 +0.1
108,349 - EX28DRAFT_3438 0.17 +0.0
108,399 + EX28DRAFT_3438 0.20 +0.5
108,400 - EX28DRAFT_3438 0.20 +0.6
108,400 - EX28DRAFT_3438 0.20 -1.4
108,640 + EX28DRAFT_3438 0.34 +0.4
108,643 - EX28DRAFT_3438 0.35 -0.5

Or see this region's nucleotide sequence