Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3420 and EX28DRAFT_3421 are separated by 95 nucleotides EX28DRAFT_3421 and EX28DRAFT_3422 are separated by 95 nucleotides EX28DRAFT_3422 and EX28DRAFT_3423 are separated by 41 nucleotides EX28DRAFT_3423 and EX28DRAFT_3424 are separated by 332 nucleotides
EX28DRAFT_3420: EX28DRAFT_3420 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 91,550 to 92,929
_3420
EX28DRAFT_3421: EX28DRAFT_3421 - Uncharacterized protein conserved in bacteria, at 93,025 to 93,576
_3421
EX28DRAFT_3422: EX28DRAFT_3422 - Predicted Zn-dependent proteases and their inactivated homologs, at 93,672 to 95,024
_3422
EX28DRAFT_3423: EX28DRAFT_3423 - Soluble cytochrome b562, at 95,066 to 95,452
_3423
EX28DRAFT_3424: EX28DRAFT_3424 - PRD domain protein EF_0829/AHA_3910, at 95,785 to 96,105
_3424
Position (kb)
93
94
95
96 Strain fitness (log2 ratio)
-2
-1
0
1 at 92.722 kb on + strand, within EX28DRAFT_3420 at 93.571 kb on - strand at 93.655 kb on + strand at 93.655 kb on + strand at 93.671 kb on + strand at 93.691 kb on + strand at 93.844 kb on + strand, within EX28DRAFT_3422 at 93.845 kb on - strand, within EX28DRAFT_3422 at 93.882 kb on + strand, within EX28DRAFT_3422 at 93.883 kb on - strand, within EX28DRAFT_3422 at 93.977 kb on + strand, within EX28DRAFT_3422 at 93.978 kb on - strand, within EX28DRAFT_3422 at 94.170 kb on + strand, within EX28DRAFT_3422 at 94.284 kb on + strand, within EX28DRAFT_3422 at 94.665 kb on + strand, within EX28DRAFT_3422 at 94.934 kb on + strand at 94.968 kb on - strand at 94.973 kb on + strand at 94.974 kb on - strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.975 kb on + strand at 94.976 kb on - strand at 94.976 kb on - strand at 94.976 kb on - strand at 94.976 kb on - strand at 94.976 kb on - strand at 94.976 kb on - strand at 94.991 kb on - strand at 95.025 kb on + strand at 95.042 kb on + strand at 95.042 kb on + strand at 95.313 kb on - strand, within EX28DRAFT_3423 at 95.368 kb on + strand, within EX28DRAFT_3423 at 95.516 kb on - strand at 95.519 kb on + strand at 95.520 kb on - strand at 95.597 kb on + strand at 95.629 kb on - strand at 95.648 kb on + strand at 95.649 kb on - strand at 95.649 kb on - strand at 95.708 kb on + strand at 95.835 kb on + strand, within EX28DRAFT_3424 at 95.835 kb on + strand, within EX28DRAFT_3424 at 95.835 kb on + strand, within EX28DRAFT_3424 at 95.851 kb on + strand, within EX28DRAFT_3424 at 95.851 kb on + strand, within EX28DRAFT_3424 at 95.891 kb on + strand, within EX28DRAFT_3424
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 92,722 + EX28DRAFT_3420 0.85 +0.2 93,571 - -1.4 93,655 + -1.0 93,655 + -0.3 93,671 + -0.4 93,691 + +0.1 93,844 + EX28DRAFT_3422 0.13 -0.4 93,845 - EX28DRAFT_3422 0.13 -1.1 93,882 + EX28DRAFT_3422 0.16 -0.6 93,883 - EX28DRAFT_3422 0.16 -1.8 93,977 + EX28DRAFT_3422 0.23 -0.5 93,978 - EX28DRAFT_3422 0.23 +0.8 94,170 + EX28DRAFT_3422 0.37 -0.1 94,284 + EX28DRAFT_3422 0.45 +0.1 94,665 + EX28DRAFT_3422 0.73 -0.2 94,934 + -0.0 94,968 - -0.0 94,973 + +0.3 94,974 - -1.3 94,975 + -0.5 94,975 + -0.4 94,975 + -0.4 94,975 + +0.7 94,975 + +1.1 94,975 + -0.3 94,975 + +0.2 94,975 + +0.0 94,975 + +0.5 94,975 + +0.5 94,976 - +0.3 94,976 - -0.4 94,976 - +0.6 94,976 - -0.5 94,976 - +0.4 94,976 - -0.5 94,991 - -0.3 95,025 + -0.8 95,042 + +0.0 95,042 + +0.6 95,313 - EX28DRAFT_3423 0.64 +0.2 95,368 + EX28DRAFT_3423 0.78 -0.3 95,516 - -1.5 95,519 + +0.7 95,520 - -0.3 95,597 + -0.2 95,629 - -0.1 95,648 + +0.0 95,649 - -0.6 95,649 - -0.6 95,708 + -0.6 95,835 + EX28DRAFT_3424 0.16 -0.3 95,835 + EX28DRAFT_3424 0.16 +0.0 95,835 + EX28DRAFT_3424 0.16 -0.6 95,851 + EX28DRAFT_3424 0.21 -1.2 95,851 + EX28DRAFT_3424 0.21 -0.7 95,891 + EX28DRAFT_3424 0.33 -0.4
Or see this region's nucleotide sequence