Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3406 and EX28DRAFT_3407 overlap by 4 nucleotides EX28DRAFT_3407 and EX28DRAFT_3408 are separated by 2 nucleotides EX28DRAFT_3408 and EX28DRAFT_3409 are separated by 44 nucleotides EX28DRAFT_3409 and EX28DRAFT_3410 overlap by 53 nucleotides
EX28DRAFT_3406: EX28DRAFT_3406 - Outer membrane protein, at 75,309 to 77,042
_3406
EX28DRAFT_3407: EX28DRAFT_3407 - Uncharacterized protein conserved in bacteria, at 77,039 to 80,815
_3407
EX28DRAFT_3408: EX28DRAFT_3408 - Uncharacterized conserved protein, at 80,818 to 81,162
_3408
EX28DRAFT_3409: EX28DRAFT_3409 - hypothetical protein, at 81,207 to 81,530
_3409
EX28DRAFT_3410: EX28DRAFT_3410 - hypothetical protein, at 81,478 to 81,948
_3410
Position (kb) 77
78
79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 76.287 kb on + strand, within EX28DRAFT_3406 at 76.288 kb on - strand, within EX28DRAFT_3406 at 76.288 kb on - strand, within EX28DRAFT_3406 at 76.288 kb on - strand, within EX28DRAFT_3406 at 76.290 kb on + strand, within EX28DRAFT_3406 at 76.290 kb on + strand, within EX28DRAFT_3406 at 76.290 kb on + strand, within EX28DRAFT_3406 at 76.290 kb on + strand, within EX28DRAFT_3406 at 76.291 kb on - strand, within EX28DRAFT_3406 at 76.291 kb on - strand, within EX28DRAFT_3406 at 76.291 kb on - strand, within EX28DRAFT_3406 at 76.291 kb on - strand, within EX28DRAFT_3406 at 76.291 kb on - strand, within EX28DRAFT_3406 at 76.346 kb on + strand, within EX28DRAFT_3406 at 76.430 kb on + strand, within EX28DRAFT_3406 at 76.627 kb on - strand, within EX28DRAFT_3406 at 76.744 kb on - strand, within EX28DRAFT_3406 at 76.745 kb on + strand, within EX28DRAFT_3406 at 76.745 kb on + strand, within EX28DRAFT_3406 at 76.745 kb on + strand, within EX28DRAFT_3406 at 76.746 kb on - strand, within EX28DRAFT_3406 at 76.746 kb on - strand, within EX28DRAFT_3406 at 76.746 kb on - strand, within EX28DRAFT_3406 at 76.750 kb on - strand, within EX28DRAFT_3406 at 76.750 kb on - strand, within EX28DRAFT_3406 at 76.750 kb on - strand, within EX28DRAFT_3406 at 76.830 kb on + strand, within EX28DRAFT_3406 at 76.831 kb on - strand, within EX28DRAFT_3406 at 76.831 kb on - strand, within EX28DRAFT_3406 at 76.911 kb on - strand at 76.934 kb on - strand at 77.008 kb on + strand at 77.016 kb on + strand at 77.016 kb on + strand at 77.016 kb on + strand at 77.017 kb on - strand at 77.017 kb on - strand at 77.017 kb on - strand at 77.047 kb on - strand at 77.059 kb on - strand at 77.331 kb on + strand at 77.352 kb on + strand at 77.468 kb on - strand, within EX28DRAFT_3407 at 77.795 kb on + strand, within EX28DRAFT_3407 at 77.927 kb on - strand, within EX28DRAFT_3407 at 77.933 kb on - strand, within EX28DRAFT_3407 at 77.933 kb on - strand, within EX28DRAFT_3407 at 77.980 kb on - strand, within EX28DRAFT_3407 at 77.980 kb on - strand, within EX28DRAFT_3407 at 78.395 kb on - strand, within EX28DRAFT_3407 at 78.464 kb on + strand, within EX28DRAFT_3407 at 78.499 kb on + strand, within EX28DRAFT_3407 at 78.563 kb on + strand, within EX28DRAFT_3407 at 78.564 kb on - strand, within EX28DRAFT_3407 at 78.564 kb on - strand, within EX28DRAFT_3407 at 78.564 kb on - strand, within EX28DRAFT_3407 at 78.564 kb on - strand, within EX28DRAFT_3407 at 78.564 kb on - strand, within EX28DRAFT_3407 at 78.773 kb on - strand, within EX28DRAFT_3407 at 78.908 kb on - strand, within EX28DRAFT_3407 at 79.063 kb on + strand, within EX28DRAFT_3407 at 79.262 kb on - strand, within EX28DRAFT_3407 at 79.451 kb on - strand, within EX28DRAFT_3407 at 79.543 kb on + strand, within EX28DRAFT_3407 at 79.571 kb on - strand, within EX28DRAFT_3407 at 79.718 kb on - strand, within EX28DRAFT_3407 at 79.797 kb on + strand, within EX28DRAFT_3407 at 80.059 kb on + strand, within EX28DRAFT_3407 at 80.083 kb on + strand, within EX28DRAFT_3407 at 80.116 kb on + strand, within EX28DRAFT_3407 at 80.116 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.119 kb on + strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.120 kb on - strand, within EX28DRAFT_3407 at 80.210 kb on - strand, within EX28DRAFT_3407 at 80.242 kb on + strand, within EX28DRAFT_3407 at 80.471 kb on + strand at 80.598 kb on + strand at 80.660 kb on + strand at 80.660 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.664 kb on + strand at 80.665 kb on - strand at 80.665 kb on - strand at 80.682 kb on + strand at 80.687 kb on + strand at 80.688 kb on - strand at 80.688 kb on - strand at 80.728 kb on - strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.751 kb on + strand at 80.752 kb on - strand at 80.752 kb on - strand at 80.753 kb on + strand at 80.753 kb on + strand at 80.775 kb on + strand at 80.799 kb on - strand at 80.799 kb on - strand at 80.814 kb on - strand at 80.899 kb on + strand, within EX28DRAFT_3408 at 81.089 kb on - strand, within EX28DRAFT_3408 at 81.094 kb on + strand, within EX28DRAFT_3408 at 81.095 kb on - strand, within EX28DRAFT_3408 at 81.135 kb on + strand at 81.266 kb on - strand, within EX28DRAFT_3409 at 81.318 kb on + strand, within EX28DRAFT_3409 at 81.318 kb on + strand, within EX28DRAFT_3409 at 81.329 kb on + strand, within EX28DRAFT_3409 at 81.380 kb on - strand, within EX28DRAFT_3409 at 81.402 kb on + strand, within EX28DRAFT_3409 at 81.402 kb on + strand, within EX28DRAFT_3409 at 81.403 kb on - strand, within EX28DRAFT_3409 at 81.403 kb on - strand, within EX28DRAFT_3409 at 81.406 kb on + strand, within EX28DRAFT_3409 at 81.406 kb on + strand, within EX28DRAFT_3409 at 81.407 kb on - strand, within EX28DRAFT_3409 at 81.505 kb on - strand at 81.532 kb on + strand, within EX28DRAFT_3410 at 81.533 kb on - strand, within EX28DRAFT_3410
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 76,287 + EX28DRAFT_3406 0.56 +0.4 76,288 - EX28DRAFT_3406 0.56 -0.1 76,288 - EX28DRAFT_3406 0.56 +0.1 76,288 - EX28DRAFT_3406 0.56 +0.2 76,290 + EX28DRAFT_3406 0.57 -0.1 76,290 + EX28DRAFT_3406 0.57 -0.2 76,290 + EX28DRAFT_3406 0.57 -0.5 76,290 + EX28DRAFT_3406 0.57 +0.1 76,291 - EX28DRAFT_3406 0.57 -0.7 76,291 - EX28DRAFT_3406 0.57 -0.8 76,291 - EX28DRAFT_3406 0.57 +1.8 76,291 - EX28DRAFT_3406 0.57 -0.1 76,291 - EX28DRAFT_3406 0.57 -0.0 76,346 + EX28DRAFT_3406 0.60 +0.0 76,430 + EX28DRAFT_3406 0.65 +0.2 76,627 - EX28DRAFT_3406 0.76 +0.4 76,744 - EX28DRAFT_3406 0.83 -0.6 76,745 + EX28DRAFT_3406 0.83 -0.1 76,745 + EX28DRAFT_3406 0.83 +0.3 76,745 + EX28DRAFT_3406 0.83 -0.1 76,746 - EX28DRAFT_3406 0.83 -0.6 76,746 - EX28DRAFT_3406 0.83 -0.9 76,746 - EX28DRAFT_3406 0.83 +0.3 76,750 - EX28DRAFT_3406 0.83 -1.1 76,750 - EX28DRAFT_3406 0.83 -1.3 76,750 - EX28DRAFT_3406 0.83 -0.4 76,830 + EX28DRAFT_3406 0.88 -0.2 76,831 - EX28DRAFT_3406 0.88 -3.3 76,831 - EX28DRAFT_3406 0.88 +0.4 76,911 - -1.1 76,934 - +0.4 77,008 + +1.0 77,016 + -1.0 77,016 + -0.8 77,016 + +0.6 77,017 - +0.3 77,017 - +0.1 77,017 - +0.2 77,047 - -0.1 77,059 - -0.6 77,331 + -0.3 77,352 + -0.3 77,468 - EX28DRAFT_3407 0.11 -0.8 77,795 + EX28DRAFT_3407 0.20 -0.5 77,927 - EX28DRAFT_3407 0.24 +0.8 77,933 - EX28DRAFT_3407 0.24 -0.1 77,933 - EX28DRAFT_3407 0.24 -0.1 77,980 - EX28DRAFT_3407 0.25 -2.6 77,980 - EX28DRAFT_3407 0.25 -0.3 78,395 - EX28DRAFT_3407 0.36 -0.1 78,464 + EX28DRAFT_3407 0.38 +0.4 78,499 + EX28DRAFT_3407 0.39 +0.1 78,563 + EX28DRAFT_3407 0.40 +0.1 78,564 - EX28DRAFT_3407 0.40 -0.5 78,564 - EX28DRAFT_3407 0.40 -0.2 78,564 - EX28DRAFT_3407 0.40 -1.5 78,564 - EX28DRAFT_3407 0.40 +0.7 78,564 - EX28DRAFT_3407 0.40 -0.8 78,773 - EX28DRAFT_3407 0.46 +0.5 78,908 - EX28DRAFT_3407 0.49 -0.3 79,063 + EX28DRAFT_3407 0.54 +0.3 79,262 - EX28DRAFT_3407 0.59 +0.4 79,451 - EX28DRAFT_3407 0.64 +0.2 79,543 + EX28DRAFT_3407 0.66 -0.8 79,571 - EX28DRAFT_3407 0.67 -1.0 79,718 - EX28DRAFT_3407 0.71 -1.4 79,797 + EX28DRAFT_3407 0.73 +0.3 80,059 + EX28DRAFT_3407 0.80 -1.4 80,083 + EX28DRAFT_3407 0.81 +0.3 80,116 + EX28DRAFT_3407 0.81 -0.6 80,116 + EX28DRAFT_3407 0.81 +0.8 80,119 + EX28DRAFT_3407 0.82 -0.3 80,119 + EX28DRAFT_3407 0.82 -0.1 80,119 + EX28DRAFT_3407 0.82 -0.3 80,119 + EX28DRAFT_3407 0.82 +0.8 80,120 - EX28DRAFT_3407 0.82 -1.6 80,120 - EX28DRAFT_3407 0.82 +0.5 80,120 - EX28DRAFT_3407 0.82 +0.3 80,120 - EX28DRAFT_3407 0.82 +0.4 80,210 - EX28DRAFT_3407 0.84 +0.4 80,242 + EX28DRAFT_3407 0.85 +0.4 80,471 + -0.2 80,598 + -0.5 80,660 + +0.1 80,660 + -1.3 80,664 + -0.3 80,664 + -0.8 80,664 + -1.0 80,664 + +0.6 80,664 + -0.1 80,664 + -0.2 80,664 + +0.3 80,665 - -0.7 80,665 - +0.2 80,682 + -0.5 80,687 + -1.2 80,688 - -1.4 80,688 - +0.3 80,728 - -2.6 80,751 + +0.5 80,751 + +0.1 80,751 + +1.9 80,751 + +0.0 80,751 + -0.2 80,751 + -0.8 80,751 + +0.4 80,752 - -1.3 80,752 - -1.1 80,753 + +0.3 80,753 + -1.4 80,775 + -0.4 80,799 - -1.4 80,799 - -1.3 80,814 - -1.1 80,899 + EX28DRAFT_3408 0.23 -2.4 81,089 - EX28DRAFT_3408 0.79 -1.4 81,094 + EX28DRAFT_3408 0.80 -1.6 81,095 - EX28DRAFT_3408 0.80 -2.8 81,135 + +0.6 81,266 - EX28DRAFT_3409 0.18 +0.3 81,318 + EX28DRAFT_3409 0.34 -0.6 81,318 + EX28DRAFT_3409 0.34 +0.0 81,329 + EX28DRAFT_3409 0.38 -0.0 81,380 - EX28DRAFT_3409 0.53 -0.1 81,402 + EX28DRAFT_3409 0.60 -0.5 81,402 + EX28DRAFT_3409 0.60 -1.2 81,403 - EX28DRAFT_3409 0.60 -0.6 81,403 - EX28DRAFT_3409 0.60 -1.3 81,406 + EX28DRAFT_3409 0.61 -0.6 81,406 + EX28DRAFT_3409 0.61 -0.2 81,407 - EX28DRAFT_3409 0.62 +0.2 81,505 - -0.9 81,532 + EX28DRAFT_3410 0.11 -0.9 81,533 - EX28DRAFT_3410 0.12 -1.3
Or see this region's nucleotide sequence