Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3405

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3404 and EX28DRAFT_3405 are separated by 253 nucleotidesEX28DRAFT_3405 and EX28DRAFT_3406 are separated by 224 nucleotides EX28DRAFT_3404: EX28DRAFT_3404 - Hemolysins and related proteins containing CBS domains, at 72,852 to 74,189 _3404 EX28DRAFT_3405: EX28DRAFT_3405 - methionine-S-sulfoxide reductase, at 74,443 to 75,084 _3405 EX28DRAFT_3406: EX28DRAFT_3406 - Outer membrane protein, at 75,309 to 77,042 _3406 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2 3at 73.457 kb on + strand, within EX28DRAFT_3404at 73.457 kb on + strand, within EX28DRAFT_3404at 73.457 kb on + strand, within EX28DRAFT_3404at 73.458 kb on - strand, within EX28DRAFT_3404at 73.523 kb on + strand, within EX28DRAFT_3404at 73.523 kb on + strand, within EX28DRAFT_3404at 73.524 kb on - strand, within EX28DRAFT_3404at 73.524 kb on - strand, within EX28DRAFT_3404at 73.524 kb on - strand, within EX28DRAFT_3404at 73.524 kb on - strand, within EX28DRAFT_3404at 73.649 kb on - strand, within EX28DRAFT_3404at 73.649 kb on - strand, within EX28DRAFT_3404at 73.677 kb on - strand, within EX28DRAFT_3404at 73.737 kb on + strand, within EX28DRAFT_3404at 73.737 kb on + strand, within EX28DRAFT_3404at 73.737 kb on + strand, within EX28DRAFT_3404at 73.756 kb on + strand, within EX28DRAFT_3404at 73.756 kb on + strand, within EX28DRAFT_3404at 73.918 kb on + strand, within EX28DRAFT_3404at 73.922 kb on + strand, within EX28DRAFT_3404at 73.934 kb on + strand, within EX28DRAFT_3404at 73.935 kb on - strand, within EX28DRAFT_3404at 73.936 kb on + strand, within EX28DRAFT_3404at 73.936 kb on + strand, within EX28DRAFT_3404at 73.937 kb on - strand, within EX28DRAFT_3404at 74.128 kb on + strandat 74.130 kb on + strandat 74.166 kb on + strandat 74.167 kb on - strandat 74.167 kb on - strandat 74.177 kb on + strandat 74.185 kb on - strandat 74.189 kb on + strandat 74.190 kb on - strandat 74.298 kb on + strandat 74.299 kb on - strandat 74.378 kb on + strandat 74.378 kb on + strandat 74.378 kb on + strandat 74.379 kb on - strandat 74.380 kb on + strandat 74.380 kb on + strandat 74.380 kb on + strandat 74.380 kb on + strandat 74.381 kb on - strandat 74.381 kb on - strandat 74.381 kb on - strandat 74.438 kb on - strandat 74.442 kb on - strandat 74.516 kb on + strand, within EX28DRAFT_3405at 74.516 kb on + strand, within EX28DRAFT_3405at 74.540 kb on + strand, within EX28DRAFT_3405at 74.543 kb on + strand, within EX28DRAFT_3405at 74.544 kb on - strand, within EX28DRAFT_3405at 74.544 kb on - strand, within EX28DRAFT_3405at 74.544 kb on - strand, within EX28DRAFT_3405at 74.544 kb on - strand, within EX28DRAFT_3405at 74.666 kb on + strand, within EX28DRAFT_3405at 74.667 kb on - strand, within EX28DRAFT_3405at 74.762 kb on + strand, within EX28DRAFT_3405at 74.767 kb on - strand, within EX28DRAFT_3405at 75.137 kb on - strandat 75.150 kb on - strandat 75.174 kb on + strandat 75.188 kb on - strandat 75.198 kb on + strandat 75.294 kb on + strandat 75.529 kb on - strand, within EX28DRAFT_3406at 75.531 kb on + strand, within EX28DRAFT_3406at 75.532 kb on - strand, within EX28DRAFT_3406at 75.532 kb on - strand, within EX28DRAFT_3406at 75.590 kb on + strand, within EX28DRAFT_3406at 75.591 kb on - strand, within EX28DRAFT_3406at 75.774 kb on - strand, within EX28DRAFT_3406at 75.801 kb on - strand, within EX28DRAFT_3406at 75.856 kb on - strand, within EX28DRAFT_3406at 75.921 kb on + strand, within EX28DRAFT_3406at 75.922 kb on - strand, within EX28DRAFT_3406at 75.922 kb on - strand, within EX28DRAFT_3406at 75.958 kb on - strand, within EX28DRAFT_3406at 75.960 kb on + strand, within EX28DRAFT_3406at 75.960 kb on + strand, within EX28DRAFT_3406at 75.961 kb on - strand, within EX28DRAFT_3406at 75.961 kb on - strand, within EX28DRAFT_3406at 76.016 kb on + strand, within EX28DRAFT_3406

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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73,457 + EX28DRAFT_3404 0.45 -0.1
73,457 + EX28DRAFT_3404 0.45 -0.5
73,457 + EX28DRAFT_3404 0.45 -2.5
73,458 - EX28DRAFT_3404 0.45 +0.5
73,523 + EX28DRAFT_3404 0.50 -0.9
73,523 + EX28DRAFT_3404 0.50 -0.6
73,524 - EX28DRAFT_3404 0.50 +2.3
73,524 - EX28DRAFT_3404 0.50 +3.5
73,524 - EX28DRAFT_3404 0.50 -2.0
73,524 - EX28DRAFT_3404 0.50 +0.2
73,649 - EX28DRAFT_3404 0.60 -0.4
73,649 - EX28DRAFT_3404 0.60 -1.0
73,677 - EX28DRAFT_3404 0.62 -0.4
73,737 + EX28DRAFT_3404 0.66 +0.9
73,737 + EX28DRAFT_3404 0.66 +0.5
73,737 + EX28DRAFT_3404 0.66 -0.1
73,756 + EX28DRAFT_3404 0.68 -0.5
73,756 + EX28DRAFT_3404 0.68 +0.3
73,918 + EX28DRAFT_3404 0.80 -1.6
73,922 + EX28DRAFT_3404 0.80 -1.0
73,934 + EX28DRAFT_3404 0.81 +0.1
73,935 - EX28DRAFT_3404 0.81 +0.7
73,936 + EX28DRAFT_3404 0.81 -1.2
73,936 + EX28DRAFT_3404 0.81 +0.3
73,937 - EX28DRAFT_3404 0.81 -1.5
74,128 + -0.5
74,130 + +0.6
74,166 + -0.4
74,167 - -0.0
74,167 - +1.1
74,177 + -0.4
74,185 - -0.2
74,189 + +0.5
74,190 - +0.6
74,298 + -0.4
74,299 - -0.1
74,378 + -0.0
74,378 + -0.1
74,378 + +0.1
74,379 - +0.3
74,380 + -0.3
74,380 + -0.0
74,380 + -0.2
74,380 + +0.4
74,381 - +0.1
74,381 - -0.2
74,381 - -0.2
74,438 - +3.0
74,442 - -0.6
74,516 + EX28DRAFT_3405 0.11 +0.1
74,516 + EX28DRAFT_3405 0.11 -0.1
74,540 + EX28DRAFT_3405 0.15 +0.4
74,543 + EX28DRAFT_3405 0.16 -0.2
74,544 - EX28DRAFT_3405 0.16 -0.3
74,544 - EX28DRAFT_3405 0.16 +0.2
74,544 - EX28DRAFT_3405 0.16 +1.4
74,544 - EX28DRAFT_3405 0.16 -0.1
74,666 + EX28DRAFT_3405 0.35 -0.3
74,667 - EX28DRAFT_3405 0.35 -0.1
74,762 + EX28DRAFT_3405 0.50 -2.2
74,767 - EX28DRAFT_3405 0.50 -0.1
75,137 - -0.3
75,150 - -0.4
75,174 + +2.3
75,188 - +0.2
75,198 + +0.3
75,294 + -0.2
75,529 - EX28DRAFT_3406 0.13 +0.0
75,531 + EX28DRAFT_3406 0.13 +0.2
75,532 - EX28DRAFT_3406 0.13 -0.1
75,532 - EX28DRAFT_3406 0.13 -1.0
75,590 + EX28DRAFT_3406 0.16 +0.3
75,591 - EX28DRAFT_3406 0.16 +0.1
75,774 - EX28DRAFT_3406 0.27 +0.6
75,801 - EX28DRAFT_3406 0.28 -0.5
75,856 - EX28DRAFT_3406 0.32 +0.2
75,921 + EX28DRAFT_3406 0.35 -0.8
75,922 - EX28DRAFT_3406 0.35 +0.3
75,922 - EX28DRAFT_3406 0.35 -0.3
75,958 - EX28DRAFT_3406 0.37 +0.9
75,960 + EX28DRAFT_3406 0.38 -0.3
75,960 + EX28DRAFT_3406 0.38 -0.1
75,961 - EX28DRAFT_3406 0.38 -1.1
75,961 - EX28DRAFT_3406 0.38 -0.1
76,016 + EX28DRAFT_3406 0.41 -0.5

Or see this region's nucleotide sequence