Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3401 and EX28DRAFT_3402 overlap by 7 nucleotides EX28DRAFT_3402 and EX28DRAFT_3403 are separated by 324 nucleotides EX28DRAFT_3403 and EX28DRAFT_3404 are separated by 72 nucleotides
EX28DRAFT_3401: EX28DRAFT_3401 - 3'(2'),5'-bisphosphate nucleotidase, bacterial, at 70,957 to 71,697
_3401
EX28DRAFT_3402: EX28DRAFT_3402 - conserved hypothetical protein YtfJ-family, TIGR01626, at 71,691 to 72,248
_3402
EX28DRAFT_3403: EX28DRAFT_3403 - Protein of unknown function (DUF1107), at 72,573 to 72,779
_3403
EX28DRAFT_3404: EX28DRAFT_3404 - Hemolysins and related proteins containing CBS domains, at 72,852 to 74,189
_3404
Position (kb) 72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 71.644 kb on + strand at 71.646 kb on + strand at 71.646 kb on + strand at 71.692 kb on + strand at 71.693 kb on - strand at 72.050 kb on + strand, within EX28DRAFT_3402 at 72.051 kb on - strand, within EX28DRAFT_3402 at 72.051 kb on - strand, within EX28DRAFT_3402 at 72.089 kb on + strand, within EX28DRAFT_3402 at 72.103 kb on + strand, within EX28DRAFT_3402 at 72.104 kb on - strand, within EX28DRAFT_3402 at 72.104 kb on - strand, within EX28DRAFT_3402 at 72.108 kb on - strand, within EX28DRAFT_3402 at 72.114 kb on - strand, within EX28DRAFT_3402 at 72.233 kb on + strand at 72.233 kb on + strand at 72.237 kb on - strand at 72.237 kb on - strand at 72.240 kb on + strand at 72.299 kb on + strand at 72.299 kb on + strand at 72.300 kb on - strand at 72.300 kb on - strand at 72.300 kb on - strand at 72.305 kb on + strand at 72.305 kb on + strand at 72.306 kb on - strand at 72.364 kb on + strand at 72.364 kb on + strand at 72.365 kb on - strand at 72.388 kb on + strand at 72.454 kb on - strand at 72.474 kb on + strand at 72.485 kb on + strand at 72.485 kb on + strand at 72.486 kb on - strand at 72.486 kb on - strand at 72.488 kb on - strand at 72.551 kb on - strand at 72.567 kb on - strand at 72.591 kb on + strand at 72.592 kb on - strand at 72.592 kb on - strand at 72.615 kb on + strand, within EX28DRAFT_3403 at 72.616 kb on - strand, within EX28DRAFT_3403 at 72.645 kb on + strand, within EX28DRAFT_3403 at 72.645 kb on + strand, within EX28DRAFT_3403 at 72.645 kb on + strand, within EX28DRAFT_3403 at 72.646 kb on - strand, within EX28DRAFT_3403 at 72.646 kb on - strand, within EX28DRAFT_3403 at 72.646 kb on - strand, within EX28DRAFT_3403 at 72.646 kb on - strand, within EX28DRAFT_3403 at 72.790 kb on - strand at 72.796 kb on + strand at 72.897 kb on + strand at 73.017 kb on - strand, within EX28DRAFT_3404 at 73.025 kb on + strand, within EX28DRAFT_3404 at 73.025 kb on + strand, within EX28DRAFT_3404 at 73.035 kb on - strand, within EX28DRAFT_3404 at 73.098 kb on + strand, within EX28DRAFT_3404 at 73.140 kb on - strand, within EX28DRAFT_3404 at 73.224 kb on - strand, within EX28DRAFT_3404 at 73.227 kb on - strand, within EX28DRAFT_3404 at 73.457 kb on + strand, within EX28DRAFT_3404 at 73.457 kb on + strand, within EX28DRAFT_3404 at 73.457 kb on + strand, within EX28DRAFT_3404 at 73.458 kb on - strand, within EX28DRAFT_3404 at 73.523 kb on + strand, within EX28DRAFT_3404 at 73.523 kb on + strand, within EX28DRAFT_3404 at 73.524 kb on - strand, within EX28DRAFT_3404 at 73.524 kb on - strand, within EX28DRAFT_3404 at 73.524 kb on - strand, within EX28DRAFT_3404 at 73.524 kb on - strand, within EX28DRAFT_3404 at 73.649 kb on - strand, within EX28DRAFT_3404 at 73.649 kb on - strand, within EX28DRAFT_3404 at 73.677 kb on - strand, within EX28DRAFT_3404 at 73.737 kb on + strand, within EX28DRAFT_3404 at 73.737 kb on + strand, within EX28DRAFT_3404 at 73.737 kb on + strand, within EX28DRAFT_3404 at 73.756 kb on + strand, within EX28DRAFT_3404 at 73.756 kb on + strand, within EX28DRAFT_3404
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 71,644 + -0.3 71,646 + -2.0 71,646 + -1.2 71,692 + +0.3 71,693 - -0.1 72,050 + EX28DRAFT_3402 0.64 +0.2 72,051 - EX28DRAFT_3402 0.65 -0.6 72,051 - EX28DRAFT_3402 0.65 +0.1 72,089 + EX28DRAFT_3402 0.71 -0.2 72,103 + EX28DRAFT_3402 0.74 +0.9 72,104 - EX28DRAFT_3402 0.74 -0.4 72,104 - EX28DRAFT_3402 0.74 +0.1 72,108 - EX28DRAFT_3402 0.75 +1.2 72,114 - EX28DRAFT_3402 0.76 -0.1 72,233 + -1.0 72,233 + -0.0 72,237 - -0.6 72,237 - -0.4 72,240 + +0.7 72,299 + +0.6 72,299 + -0.0 72,300 - -2.0 72,300 - -0.4 72,300 - -1.9 72,305 + +0.5 72,305 + -0.3 72,306 - +0.1 72,364 + -0.5 72,364 + -0.8 72,365 - +0.8 72,388 + +0.7 72,454 - +0.5 72,474 + +0.7 72,485 + -0.4 72,485 + +0.3 72,486 - +0.3 72,486 - -0.2 72,488 - -0.3 72,551 - +0.0 72,567 - -0.3 72,591 + -0.5 72,592 - -0.1 72,592 - -0.2 72,615 + EX28DRAFT_3403 0.20 +0.1 72,616 - EX28DRAFT_3403 0.21 +1.8 72,645 + EX28DRAFT_3403 0.35 -0.2 72,645 + EX28DRAFT_3403 0.35 +0.5 72,645 + EX28DRAFT_3403 0.35 +0.3 72,646 - EX28DRAFT_3403 0.35 -0.3 72,646 - EX28DRAFT_3403 0.35 +0.3 72,646 - EX28DRAFT_3403 0.35 -2.1 72,646 - EX28DRAFT_3403 0.35 +0.5 72,790 - +0.1 72,796 + +0.5 72,897 + -0.8 73,017 - EX28DRAFT_3404 0.12 -0.5 73,025 + EX28DRAFT_3404 0.13 -2.8 73,025 + EX28DRAFT_3404 0.13 +2.1 73,035 - EX28DRAFT_3404 0.14 +1.3 73,098 + EX28DRAFT_3404 0.18 -0.3 73,140 - EX28DRAFT_3404 0.22 -0.0 73,224 - EX28DRAFT_3404 0.28 -0.0 73,227 - EX28DRAFT_3404 0.28 +0.3 73,457 + EX28DRAFT_3404 0.45 -0.1 73,457 + EX28DRAFT_3404 0.45 -0.5 73,457 + EX28DRAFT_3404 0.45 -2.5 73,458 - EX28DRAFT_3404 0.45 +0.5 73,523 + EX28DRAFT_3404 0.50 -0.9 73,523 + EX28DRAFT_3404 0.50 -0.6 73,524 - EX28DRAFT_3404 0.50 +2.3 73,524 - EX28DRAFT_3404 0.50 +3.5 73,524 - EX28DRAFT_3404 0.50 -2.0 73,524 - EX28DRAFT_3404 0.50 +0.2 73,649 - EX28DRAFT_3404 0.60 -0.4 73,649 - EX28DRAFT_3404 0.60 -1.0 73,677 - EX28DRAFT_3404 0.62 -0.4 73,737 + EX28DRAFT_3404 0.66 +0.9 73,737 + EX28DRAFT_3404 0.66 +0.5 73,737 + EX28DRAFT_3404 0.66 -0.1 73,756 + EX28DRAFT_3404 0.68 -0.5 73,756 + EX28DRAFT_3404 0.68 +0.3
Or see this region's nucleotide sequence