Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3398 and EX28DRAFT_3399 are separated by 84 nucleotides EX28DRAFT_3399 and EX28DRAFT_3400 are separated by 98 nucleotides
EX28DRAFT_3398: EX28DRAFT_3398 - Predicted nucleoside-diphosphate-sugar epimerases, at 67,405 to 68,253
_3398
EX28DRAFT_3399: EX28DRAFT_3399 - transcriptional regulator, HxlR family, at 68,338 to 68,724
_3399
EX28DRAFT_3400: EX28DRAFT_3400 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 68,823 to 70,766
_3400
Position (kb) 68
69 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 67.346 kb on - strand at 67.420 kb on - strand at 67.440 kb on + strand at 67.441 kb on - strand at 67.528 kb on - strand, within EX28DRAFT_3398 at 67.528 kb on - strand, within EX28DRAFT_3398 at 67.598 kb on + strand, within EX28DRAFT_3398 at 67.733 kb on + strand, within EX28DRAFT_3398 at 67.835 kb on + strand, within EX28DRAFT_3398 at 67.835 kb on + strand, within EX28DRAFT_3398 at 67.835 kb on + strand, within EX28DRAFT_3398 at 68.158 kb on + strand, within EX28DRAFT_3398 at 68.159 kb on - strand, within EX28DRAFT_3398 at 68.293 kb on + strand at 68.293 kb on + strand at 68.293 kb on + strand at 68.294 kb on - strand at 68.294 kb on - strand at 68.294 kb on - strand at 68.607 kb on - strand, within EX28DRAFT_3399 at 68.611 kb on + strand, within EX28DRAFT_3399 at 68.612 kb on - strand, within EX28DRAFT_3399 at 68.612 kb on - strand, within EX28DRAFT_3399 at 68.612 kb on - strand, within EX28DRAFT_3399 at 68.612 kb on - strand, within EX28DRAFT_3399 at 68.612 kb on - strand, within EX28DRAFT_3399 at 68.682 kb on + strand, within EX28DRAFT_3399 at 68.683 kb on - strand, within EX28DRAFT_3399 at 68.741 kb on + strand at 68.742 kb on - strand at 68.824 kb on + strand at 69.119 kb on + strand, within EX28DRAFT_3400 at 69.137 kb on - strand, within EX28DRAFT_3400 at 69.141 kb on - strand, within EX28DRAFT_3400 at 69.248 kb on - strand, within EX28DRAFT_3400 at 69.305 kb on + strand, within EX28DRAFT_3400 at 69.307 kb on + strand, within EX28DRAFT_3400 at 69.307 kb on + strand, within EX28DRAFT_3400 at 69.348 kb on - strand, within EX28DRAFT_3400 at 69.348 kb on - strand, within EX28DRAFT_3400 at 69.426 kb on + strand, within EX28DRAFT_3400 at 69.427 kb on - strand, within EX28DRAFT_3400 at 69.454 kb on + strand, within EX28DRAFT_3400 at 69.505 kb on + strand, within EX28DRAFT_3400 at 69.505 kb on + strand, within EX28DRAFT_3400 at 69.506 kb on - strand, within EX28DRAFT_3400 at 69.506 kb on - strand, within EX28DRAFT_3400 at 69.506 kb on - strand, within EX28DRAFT_3400 at 69.506 kb on - strand, within EX28DRAFT_3400 at 69.611 kb on - strand, within EX28DRAFT_3400 at 69.676 kb on + strand, within EX28DRAFT_3400 at 69.676 kb on + strand, within EX28DRAFT_3400 at 69.677 kb on - strand, within EX28DRAFT_3400
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 67,346 - +0.6 67,420 - -2.2 67,440 + +0.7 67,441 - +0.2 67,528 - EX28DRAFT_3398 0.14 -0.2 67,528 - EX28DRAFT_3398 0.14 -0.3 67,598 + EX28DRAFT_3398 0.23 +1.0 67,733 + EX28DRAFT_3398 0.39 -0.2 67,835 + EX28DRAFT_3398 0.51 -1.9 67,835 + EX28DRAFT_3398 0.51 +0.4 67,835 + EX28DRAFT_3398 0.51 +0.3 68,158 + EX28DRAFT_3398 0.89 -0.2 68,159 - EX28DRAFT_3398 0.89 +0.4 68,293 + +0.2 68,293 + -0.2 68,293 + +0.1 68,294 - -0.1 68,294 - +0.2 68,294 - +0.1 68,607 - EX28DRAFT_3399 0.70 -0.5 68,611 + EX28DRAFT_3399 0.71 -0.2 68,612 - EX28DRAFT_3399 0.71 -0.2 68,612 - EX28DRAFT_3399 0.71 -1.7 68,612 - EX28DRAFT_3399 0.71 +0.4 68,612 - EX28DRAFT_3399 0.71 +0.3 68,612 - EX28DRAFT_3399 0.71 -0.3 68,682 + EX28DRAFT_3399 0.89 -0.6 68,683 - EX28DRAFT_3399 0.89 +0.0 68,741 + +0.1 68,742 - +0.3 68,824 + +0.1 69,119 + EX28DRAFT_3400 0.15 +0.3 69,137 - EX28DRAFT_3400 0.16 +0.1 69,141 - EX28DRAFT_3400 0.16 +2.9 69,248 - EX28DRAFT_3400 0.22 -0.6 69,305 + EX28DRAFT_3400 0.25 +0.1 69,307 + EX28DRAFT_3400 0.25 -0.2 69,307 + EX28DRAFT_3400 0.25 -0.8 69,348 - EX28DRAFT_3400 0.27 -1.1 69,348 - EX28DRAFT_3400 0.27 -0.0 69,426 + EX28DRAFT_3400 0.31 -0.9 69,427 - EX28DRAFT_3400 0.31 -0.1 69,454 + EX28DRAFT_3400 0.32 +0.2 69,505 + EX28DRAFT_3400 0.35 -1.1 69,505 + EX28DRAFT_3400 0.35 +0.1 69,506 - EX28DRAFT_3400 0.35 -0.6 69,506 - EX28DRAFT_3400 0.35 -1.0 69,506 - EX28DRAFT_3400 0.35 +0.1 69,506 - EX28DRAFT_3400 0.35 -0.6 69,611 - EX28DRAFT_3400 0.41 +0.3 69,676 + EX28DRAFT_3400 0.44 -0.4 69,676 + EX28DRAFT_3400 0.44 -0.6 69,677 - EX28DRAFT_3400 0.44 +0.1
Or see this region's nucleotide sequence