Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3395

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3394 and EX28DRAFT_3395 are separated by 75 nucleotidesEX28DRAFT_3395 and EX28DRAFT_3396 are separated by 48 nucleotides EX28DRAFT_3394: EX28DRAFT_3394 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 62,287 to 63,252 _3394 EX28DRAFT_3395: EX28DRAFT_3395 - AraC-type DNA-binding domain-containing proteins, at 63,328 to 64,152 _3395 EX28DRAFT_3396: EX28DRAFT_3396 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 64,201 to 65,244 _3396 Position (kb) 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 62.418 kb on + strand, within EX28DRAFT_3394at 62.419 kb on - strand, within EX28DRAFT_3394at 62.419 kb on - strand, within EX28DRAFT_3394at 62.420 kb on + strand, within EX28DRAFT_3394at 62.421 kb on - strand, within EX28DRAFT_3394at 62.421 kb on - strand, within EX28DRAFT_3394at 62.421 kb on - strand, within EX28DRAFT_3394at 62.735 kb on + strand, within EX28DRAFT_3394at 62.736 kb on - strand, within EX28DRAFT_3394at 62.863 kb on + strand, within EX28DRAFT_3394at 62.864 kb on - strand, within EX28DRAFT_3394at 62.916 kb on - strand, within EX28DRAFT_3394at 62.916 kb on - strand, within EX28DRAFT_3394at 62.970 kb on + strand, within EX28DRAFT_3394at 62.970 kb on + strand, within EX28DRAFT_3394at 63.017 kb on + strand, within EX28DRAFT_3394at 63.018 kb on - strand, within EX28DRAFT_3394at 63.020 kb on + strand, within EX28DRAFT_3394at 63.021 kb on - strand, within EX28DRAFT_3394at 63.021 kb on - strand, within EX28DRAFT_3394at 63.021 kb on - strand, within EX28DRAFT_3394at 63.024 kb on + strand, within EX28DRAFT_3394at 63.025 kb on - strand, within EX28DRAFT_3394at 63.025 kb on - strand, within EX28DRAFT_3394at 63.160 kb on + strandat 63.233 kb on + strandat 63.233 kb on + strandat 63.233 kb on + strandat 63.234 kb on - strandat 63.234 kb on - strandat 63.234 kb on - strandat 63.235 kb on + strandat 63.235 kb on + strandat 63.235 kb on + strandat 63.235 kb on + strandat 63.235 kb on + strandat 63.236 kb on - strandat 63.236 kb on - strandat 63.236 kb on - strandat 63.236 kb on - strandat 63.246 kb on + strandat 63.269 kb on - strandat 63.269 kb on - strandat 63.272 kb on + strandat 63.272 kb on + strandat 63.272 kb on + strandat 63.273 kb on - strandat 63.288 kb on + strandat 63.288 kb on + strandat 63.289 kb on - strandat 63.289 kb on - strandat 63.314 kb on + strandat 63.367 kb on - strandat 63.397 kb on + strandat 63.397 kb on + strandat 63.603 kb on + strand, within EX28DRAFT_3395at 63.605 kb on + strand, within EX28DRAFT_3395at 63.605 kb on + strand, within EX28DRAFT_3395at 63.605 kb on + strand, within EX28DRAFT_3395at 63.606 kb on - strand, within EX28DRAFT_3395at 63.606 kb on - strand, within EX28DRAFT_3395at 63.606 kb on - strand, within EX28DRAFT_3395at 63.621 kb on - strand, within EX28DRAFT_3395at 63.712 kb on + strand, within EX28DRAFT_3395at 63.811 kb on - strand, within EX28DRAFT_3395at 63.863 kb on + strand, within EX28DRAFT_3395at 63.863 kb on + strand, within EX28DRAFT_3395at 63.863 kb on + strand, within EX28DRAFT_3395at 63.863 kb on + strand, within EX28DRAFT_3395at 63.934 kb on - strand, within EX28DRAFT_3395at 64.056 kb on + strand, within EX28DRAFT_3395at 64.057 kb on - strand, within EX28DRAFT_3395at 64.129 kb on - strandat 64.234 kb on - strandat 64.264 kb on - strandat 64.385 kb on - strand, within EX28DRAFT_3396at 64.497 kb on + strand, within EX28DRAFT_3396at 64.562 kb on + strand, within EX28DRAFT_3396at 64.627 kb on - strand, within EX28DRAFT_3396at 64.701 kb on + strand, within EX28DRAFT_3396at 64.702 kb on - strand, within EX28DRAFT_3396at 64.952 kb on + strand, within EX28DRAFT_3396at 64.952 kb on + strand, within EX28DRAFT_3396at 64.952 kb on + strand, within EX28DRAFT_3396at 64.956 kb on + strand, within EX28DRAFT_3396at 64.956 kb on + strand, within EX28DRAFT_3396at 64.986 kb on + strand, within EX28DRAFT_3396at 64.987 kb on - strand, within EX28DRAFT_3396at 64.987 kb on - strand, within EX28DRAFT_3396at 64.987 kb on - strand, within EX28DRAFT_3396at 65.004 kb on + strand, within EX28DRAFT_3396at 65.005 kb on - strand, within EX28DRAFT_3396at 65.039 kb on - strand, within EX28DRAFT_3396at 65.050 kb on - strand, within EX28DRAFT_3396at 65.064 kb on + strand, within EX28DRAFT_3396at 65.065 kb on - strand, within EX28DRAFT_3396at 65.144 kb on - strandat 65.148 kb on - strandat 65.148 kb on - strandat 65.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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62,418 + EX28DRAFT_3394 0.14 +0.3
62,419 - EX28DRAFT_3394 0.14 -0.1
62,419 - EX28DRAFT_3394 0.14 -0.7
62,420 + EX28DRAFT_3394 0.14 -0.0
62,421 - EX28DRAFT_3394 0.14 -0.6
62,421 - EX28DRAFT_3394 0.14 +1.9
62,421 - EX28DRAFT_3394 0.14 -1.3
62,735 + EX28DRAFT_3394 0.46 -1.2
62,736 - EX28DRAFT_3394 0.46 +0.0
62,863 + EX28DRAFT_3394 0.60 -0.6
62,864 - EX28DRAFT_3394 0.60 -0.2
62,916 - EX28DRAFT_3394 0.65 +0.0
62,916 - EX28DRAFT_3394 0.65 +0.5
62,970 + EX28DRAFT_3394 0.71 -0.2
62,970 + EX28DRAFT_3394 0.71 -0.1
63,017 + EX28DRAFT_3394 0.76 -0.3
63,018 - EX28DRAFT_3394 0.76 -0.4
63,020 + EX28DRAFT_3394 0.76 -0.7
63,021 - EX28DRAFT_3394 0.76 +0.6
63,021 - EX28DRAFT_3394 0.76 -0.4
63,021 - EX28DRAFT_3394 0.76 -0.1
63,024 + EX28DRAFT_3394 0.76 -0.1
63,025 - EX28DRAFT_3394 0.76 -0.4
63,025 - EX28DRAFT_3394 0.76 -0.3
63,160 + -0.0
63,233 + -0.4
63,233 + -0.8
63,233 + -0.8
63,234 - -0.3
63,234 - -1.4
63,234 - +0.2
63,235 + -1.1
63,235 + +0.5
63,235 + +0.1
63,235 + +0.9
63,235 + +1.6
63,236 - +0.8
63,236 - +0.8
63,236 - +0.2
63,236 - +1.0
63,246 + -0.5
63,269 - +0.2
63,269 - +0.3
63,272 + +1.2
63,272 + +0.3
63,272 + -0.8
63,273 - -0.2
63,288 + +1.5
63,288 + -0.5
63,289 - +0.7
63,289 - -0.2
63,314 + -0.7
63,367 - +0.0
63,397 + +0.1
63,397 + +0.6
63,603 + EX28DRAFT_3395 0.33 +0.8
63,605 + EX28DRAFT_3395 0.34 -0.7
63,605 + EX28DRAFT_3395 0.34 +0.3
63,605 + EX28DRAFT_3395 0.34 +0.3
63,606 - EX28DRAFT_3395 0.34 +0.1
63,606 - EX28DRAFT_3395 0.34 -0.6
63,606 - EX28DRAFT_3395 0.34 -2.4
63,621 - EX28DRAFT_3395 0.36 -0.4
63,712 + EX28DRAFT_3395 0.47 -0.3
63,811 - EX28DRAFT_3395 0.59 +0.2
63,863 + EX28DRAFT_3395 0.65 -0.1
63,863 + EX28DRAFT_3395 0.65 -1.7
63,863 + EX28DRAFT_3395 0.65 +0.2
63,863 + EX28DRAFT_3395 0.65 +0.1
63,934 - EX28DRAFT_3395 0.73 -0.3
64,056 + EX28DRAFT_3395 0.88 +0.3
64,057 - EX28DRAFT_3395 0.88 -0.2
64,129 - +0.5
64,234 - +0.1
64,264 - -0.1
64,385 - EX28DRAFT_3396 0.18 -0.3
64,497 + EX28DRAFT_3396 0.28 +0.7
64,562 + EX28DRAFT_3396 0.35 -0.6
64,627 - EX28DRAFT_3396 0.41 -0.2
64,701 + EX28DRAFT_3396 0.48 +3.9
64,702 - EX28DRAFT_3396 0.48 -0.6
64,952 + EX28DRAFT_3396 0.72 +0.4
64,952 + EX28DRAFT_3396 0.72 -0.5
64,952 + EX28DRAFT_3396 0.72 -0.7
64,956 + EX28DRAFT_3396 0.72 -1.9
64,956 + EX28DRAFT_3396 0.72 +3.6
64,986 + EX28DRAFT_3396 0.75 +2.3
64,987 - EX28DRAFT_3396 0.75 +0.2
64,987 - EX28DRAFT_3396 0.75 -0.3
64,987 - EX28DRAFT_3396 0.75 +0.7
65,004 + EX28DRAFT_3396 0.77 -0.7
65,005 - EX28DRAFT_3396 0.77 -0.3
65,039 - EX28DRAFT_3396 0.80 -0.1
65,050 - EX28DRAFT_3396 0.81 -1.0
65,064 + EX28DRAFT_3396 0.83 +0.6
65,065 - EX28DRAFT_3396 0.83 +1.6
65,144 - -0.3
65,148 - -0.5
65,148 - -0.0
65,151 + +1.0

Or see this region's nucleotide sequence